Basic Information

Insect: Amphimallon solstitiale
Gene Symbol: SCRT1
Assembly: GCA_963170755.1
Location: OY720675.1:255535837-255542524[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00056 0.18 15.4 0.2 1 23 317 339 317 339 0.95

2 12 5.7e-05 0.019 18.5 1.6 1 23 347 369 347 369 0.99

3 12 3.6e-05 0.012 19.2 0.4 2 23 377 398 376 398 0.97

4 12 1.9e-05 0.0061 20.1 1.0 1 23 404 426 404 426 0.98

5 12 0.00019 0.061 16.9 2.5 1 23 433 455 433 455 0.99

6 12 0.0013 0.43 14.3 1.1 1 23 461 483 461 483 0.95

7 12 1.3e-05 0.0043 20.5 0.1 1 23 489 511 489 511 0.99

8 12 1.4e-06 0.00047 23.6 1.2 1 23 517 540 517 540 0.96

9 12 1.7e-05 0.0055 20.2 1.9 1 23 546 569 546 569 0.96

10 12 1e-05 0.0034 20.9 2.1 1 23 575 597 575 597 0.99

11 12 0.00022 0.072 16.7 0.4 1 23 603 625 603 625 0.94

12 12 0.0014 0.47 14.1 0.1 1 23 631 655 631 655 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00056	0.18	15.4	0.2	1	23	317	339	317	339	0.95
2	12	5.7e-05	0.019	18.5	1.6	1	23	347	369	347	369	0.99
3	12	3.6e-05	0.012	19.2	0.4	2	23	377	398	376	398	0.97
4	12	1.9e-05	0.0061	20.1	1.0	1	23	404	426	404	426	0.98
5	12	0.00019	0.061	16.9	2.5	1	23	433	455	433	455	0.99
6	12	0.0013	0.43	14.3	1.1	1	23	461	483	461	483	0.95
7	12	1.3e-05	0.0043	20.5	0.1	1	23	489	511	489	511	0.99
8	12	1.4e-06	0.00047	23.6	1.2	1	23	517	540	517	540	0.96
9	12	1.7e-05	0.0055	20.2	1.9	1	23	546	569	546	569	0.96
10	12	1e-05	0.0034	20.9	2.1	1	23	575	597	575	597	0.99
11	12	0.00022	0.072	16.7	0.4	1	23	603	625	603	625	0.94
12	12	0.0014	0.47	14.1	0.1	1	23	631	655	631	655	0.94

Sequence Information

Coding Sequence: ATGTGTTCTAAGGAAGTCAAGGAAAATCCGCACTGTTTAGTGTGTAATGGTCGCGTAGGTGTATCTACAAGAAATTCATTGCAAATCTTCAATAAAGACACACAAACATGTTCCGAAAGGCCTTTAAGTTTTATAATGTCTCAAGTGCTTGGTATAGAagtaaaagaagaaaatgtgCATTCACTTTTGATATGCAAAAAGTGCTTCAAATTATTTGATGAAGTTGATGAATTAGAGCAAAGATTATTAGAAATAAAGGTTGAATTAGTTGGAAATTACAAAAAATCATATGAGAGAAGTAAAAATGGTGAAGAGGGACTTGCAGATGATGATATTGAAGTTAGTAATGAAGATGTCAAAGATTCAAATAAAGAAAACCAAGTTCctaaaaaaatattagatattccTTCATCCGATGATGATACACagCAAACAGCGACGGAAAAAGCAAATTTACAGACATTAGAGGATATTGAAATGGAACTGGTTAAAATTCATGGTGGCATTGATAAAGTTGATAGTCCCAAATCTAAACGAACAGAATTAGAAGAAACAAATCAATCCTTTCATGGTTTTGAGCCACACATTGTTGATGATGGCGCTGTTGATCATCCGTCAGATTCGGATTATGAACCTGGTGATGATGATGATAACACTGAAGCCCTTTTAGAAGCTGCTGAAATTGCTGAAAAGAATTTAGaaaaagTACAAATAAAAGTAGAACCCGGTTCAGAAGACGATAAAGCTATTAGTACGAAAAGGAAATTGTCACATTCACCAAGTTCAAAAAGATTCTTACCAAAAAAGGTCAAGGAGGAATATTTACCACCTGTTGTCACAAGGGAAGGAAATATGTACACTTGTTTACTTTGCGAAGGGGATGAAACAGTTTGTGGTGAGGCCAAAGCGATCATGCAACATGTCAAAGTAGTACATGATGCTCGCCTGTATATTTGCGATGTATGTGGTGAAGATTTCCGTAAAAGGAACGAGTTATCAACACATTTAGATGAACATGTCGCTACTGAAGAAGGTGATTTCCAATGTGAGGTTTGTAATCGCATCTTCAGCAATTTACGGTTATTTAGGATACACAAACGTATGCACTATCCACAGAATAAGGCGTGGACTTGTGAAACTTGTGGCAAACGTTACAGTTCGAAGAATTTACTTGACGAGCACATTAATACCCATACTGGAATTCGCCCCTACATATGCCAGCTGTGCGGCAAAGATTTCGCATCGAAGTACACGTTTAAGGCCCACGAGAAAACACACGAAGTACGGCCGAGACCTTTTCAGTGTATGCAATGTAACAAATCGTTTTTGAGCCAGCAAAATCTGACGCAGCATGAACGTACTCATTCCGGAGTCAAAGAATACGCCTGCCATCTATGtgACAAACAATTCGGATCAATACACAACCTTGAGGTACACTCGATAGTGCACACTGGTTATAAACCATACGTTTGCGGTCAGTGCGGTAAAGCGTTCGCAAGAAAAGCGGAGATCAGGGACCACGAACGGACGCATACCGGTGAACGACCATATCAGTGTGAATTTTGCGGGGCTACATTCAGTCAGAGGTCCAATCTGCAATCGCACAAAAGAGCCACGCACTACGACGACAAACGGTACAAATGTGAACATTGCGGTAAAGGATTTAAAAGAAGGAGACTATTAGATTATCACATAAAGGCCGTTCACACGGGGGAACGCCCTTTCAAGTGCGACGTTTGCGATGCAACGTTCGTGTACCCCGAACATTTTAAGAAACATCGTCGGATTCATACTGGCGAGAAGCCGTTCTTGTGTGAAGTTTGCGGGAAAGCGTTCAACAGTCGCGACAACCGAAATGCGCACAGGTTCGTGCATTCGGACAAAAAACCTTACGAATGTTTGGTGTGCGGCGCTGGATTCATGAGGAAGCCGCTGTTGTATCAGCACATGCAGACGCAGGGTCATCTGAACGATACGATAGTAGTTAACCAACCAAGACTGACTACAGACGATGATCAAATCATTACGGTCAACGCCGACGGTGAAATGGAGATTGTTGAAGGCGATGTTAGCAGGTTAGAAGCTATCGATGCTGGCGAAGAAGAGATCGTTGAAGAATCGAAGCTTTATATAGCCGACATCAAACCTCACATGCTGGTAGACGGCGGCAAGGTGTTCGGTCACTCGGATGGTTCGCTCATCGTGGGTGAACACCTGGACGATGAACAAGGAGAAGATACAGAAGCTGTCGAACACATAATCATCAATGGACAGGTAGATGTACATTTGAGATGTTtgtag
Protein Sequence: MCSKEVKENPHCLVCNGRVGVSTRNSLQIFNKDTQTCSERPLSFIMSQVLGIEVKEENVHSLLICKKCFKLFDEVDELEQRLLEIKVELVGNYKKSYERSKNGEEGLADDDIEVSNEDVKDSNKENQVPKKILDIPSSDDDTQQTATEKANLQTLEDIEMELVKIHGGIDKVDSPKSKRTELEETNQSFHGFEPHIVDDGAVDHPSDSDYEPGDDDDNTEALLEAAEIAEKNLEKVQIKVEPGSEDDKAISTKRKLSHSPSSKRFLPKKVKEEYLPPVVTREGNMYTCLLCEGDETVCGEAKAIMQHVKVVHDARLYICDVCGEDFRKRNELSTHLDEHVATEEGDFQCEVCNRIFSNLRLFRIHKRMHYPQNKAWTCETCGKRYSSKNLLDEHINTHTGIRPYICQLCGKDFASKYTFKAHEKTHEVRPRPFQCMQCNKSFLSQQNLTQHERTHSGVKEYACHLCDKQFGSIHNLEVHSIVHTGYKPYVCGQCGKAFARKAEIRDHERTHTGERPYQCEFCGATFSQRSNLQSHKRATHYDDKRYKCEHCGKGFKRRRLLDYHIKAVHTGERPFKCDVCDATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYQHMQTQGHLNDTIVVNQPRLTTDDDQIITVNADGEMEIVEGDVSRLEAIDAGEEEIVEESKLYIADIKPHMLVDGGKVFGHSDGSLIVGEHLDDEQGEDTEAVEHIIINGQVDVHLRCL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00626417;
90% Identity: iTF_01121024;
80% Identity: -