Asol002194.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Amphimallon solstitiale
Gene Symbol
-
Assembly
GCA_963170755.1
Location
OY720675.1:2940815-2951667[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 35 0.0024 0.79 13.4 3.2 1 23 36 58 36 58 0.98
2 35 0.09 30 8.5 2.7 1 23 64 86 64 86 0.96
3 35 0.19 63 7.5 6.3 1 23 92 114 92 114 0.98
4 35 0.0038 1.3 12.8 1.0 1 23 120 142 120 142 0.98
5 35 0.0091 3 11.6 1.3 2 23 149 170 148 170 0.95
6 35 3e-05 0.0099 19.4 1.4 1 23 176 198 176 198 0.98
7 35 0.0036 1.2 12.9 0.5 1 23 204 226 204 226 0.97
8 35 0.016 5.4 10.8 1.1 1 23 232 254 232 254 0.97
9 35 0.0078 2.5 11.8 1.0 1 23 260 282 260 282 0.98
10 35 0.015 5 10.9 2.3 1 23 288 310 288 310 0.97
11 35 0.00058 0.19 15.4 2.0 2 23 317 338 316 338 0.97
12 35 0.0071 2.3 12.0 4.3 1 23 344 366 344 366 0.98
13 35 0.16 51 7.7 5.5 1 23 372 394 372 394 0.97
14 35 0.0033 1.1 13.0 2.0 1 23 400 422 400 422 0.98
15 35 0.0027 0.9 13.3 3.6 1 23 428 450 428 450 0.97
16 35 0.012 3.8 11.3 1.4 1 23 456 478 456 478 0.97
17 35 0.12 41 8.0 5.8 1 23 529 551 529 551 0.98
18 35 0.66 2.2e+02 5.8 3.5 1 23 557 579 557 579 0.94
19 35 0.013 4.4 11.1 3.8 1 23 585 607 585 607 0.98
20 35 0.062 20 9.0 1.2 1 23 613 635 613 635 0.94
21 35 0.014 4.7 11.0 2.3 1 23 641 663 641 663 0.97
22 35 0.084 28 8.6 1.2 1 23 669 691 669 691 0.94
23 35 0.0085 2.8 11.7 4.9 1 23 697 719 697 719 0.98
24 35 0.044 15 9.5 1.2 1 23 725 747 725 747 0.96
25 35 0.0013 0.43 14.3 0.9 1 23 753 775 753 775 0.99
26 35 5 1.6e+03 3.0 0.4 1 10 781 790 781 796 0.85
27 35 0.00096 0.32 14.7 1.0 2 23 841 862 840 862 0.97
28 35 0.014 4.6 11.0 1.7 1 23 868 890 868 890 0.95
29 35 0.00013 0.043 17.4 1.9 1 23 896 918 896 918 0.98
30 35 0.0028 0.91 13.2 3.0 1 23 962 984 962 984 0.98
31 35 0.0013 0.44 14.2 1.2 2 23 991 1012 990 1012 0.96
32 35 0.026 8.4 10.2 0.3 1 23 1018 1040 1018 1040 0.93
33 35 0.00021 0.069 16.8 1.1 1 23 1046 1068 1046 1068 0.98
34 35 0.089 29 8.5 0.4 1 23 1074 1096 1074 1096 0.96
35 35 0.0059 2 12.2 0.9 2 23 1103 1124 1102 1124 0.96

Sequence Information

Coding Sequence
ATGACAATTTCTACGGAATCCGAGTGTTCACAGTACAATTACGAAACAATTTACGAGGTTAAACGTAAGAACGACACAGACATACGTGATAGAGAAACCAAACGACACAAATGCACGCAGTGCGACTACGCCACAAATGTCAGCTCTTCATTCAAAAAGCATTTGGAGACGCATGATACTACGAAGCGATTTGAGTGTTCAAAATGCGACTACGTGACGCATGTCAAAAGGAACTTTAAATTGCATTTGGGATCACATCTTCCGACGAAACGATTTAAATGCTCGACATGTGACTTCATGACCAATAAGCAATATTGTTTCAAAAATCATTTGGACACACATCAAACTATGAAACGATTTAAATGTTCGATATGCGACTACGCGACGAATGTCGAAGTGTACCTTAAAAGGCATTTCAATAGACACGGGGCTGTAAAACGACTTAGATGCTCGAAATGCGATTTCGTAACGAATTATAAAGCGAGTCTTAAAAGGCATTCGGTTACGCACGAAATTGTGAAGCcgtttaaatgttcaaaatgcgACTACGCGACAAATTCTCAAGTCAATCTCAAAAGACATTTAGATACGCATGAGACAGTGAAGCGGTTTATATGTCTGGAATGCAAATACGGTACAAATGATAAAGGTAATTTTGAAAAACATCTGGACACACACAGTACGGTGATGCGTTTTCATTGCTCAAAATGTGACTACGCGACGAACGTCGCGGCGTATCTTAAATCGCACACCGCCACGCATGAGACTCTGCGATtgtttaaatgttcaaaatgtgaTTACGCGACGAATGCCAAAAAGTATCTTAACGTTCATTTAGATTCTCACGTAACGGTGAAACGATTTAAGTGTTCGCAATGTGACTACGCGACAAATAACAAAGGAAGACTTAAAACCCATTTCGAGAAGCATAAGTTGCCGAAACGATTGAAATGTTCCAAATGTGACTTCATGACGAATTACAAAGGGAATCTTAATAAGCATCTTAGCACACACGAGCCAATAAAGCGACATAAATGTTCGAAATGTGATTACGAGACAAATGTCAGAacgaattttaaaaaacatatggatATGCACGAGGGTGTCAAACGattcaaatgttcaaaatgtgaCTACGCCACAAACTTTAAGTTTACTTTTAAAAGACATTCGTACACGCATGATACGGTTAAGCGATTCAAATGTTTGAAATGTGACTACGTGACGAATGTCGAAGCACATCTCAAATCGCATTTGAATAGACACGAGACTGTGAAACgatttaaatgttcaaaatgcgATTTCTCGACTAAATACAAAGTGAGTCTTAGAAGACATTCTGATACCCACGAAACGATCAAACGGTTTAGTTGTTCACAGTGTGACTACGCGACGAATTCCAAAGTGAAACTTAAACAGCATTCAGATACGCACGAGACGGTGAATAGaCAATGCGTGCCGACCTCGCCAGATCATCAAATGACAATTTCTACGGAATCCGAGTGTTCACAGTACAATTACGAAACAATTTACGAGGTTAAACGTAAGAATGACACAGATTTACGTGATAGAGAAACCAAACGACACAAATGCACGCAGTGCGACTACGCCACAAATGTCAGCTGTTCATTCAAAAAACATTTGGAGACGCATGATACTACGAAGCGATTTGAGTGTTCAAAATGCGACTATGTGACGCATGTCAAAAGGAACTTTAAATTGCATTTTGGATCACATCTTCCGACGAAACGATTTAAATGTGCGAAATGTGACTACGCGACGAATTTCAATTATTGTTTGAAACGGCATTTGGGCACACATCAAACTATGAAACGATTTAAATGTTCGGAATGTGACTACGCGACGCACGTCGAAAATAATCTTAAAGCGCATTTCGGGTCACATCTTCCAACGAAACGATTTAACTGTGCGAAATGTGACTACGCGACGAATCACAAAAGTTCTTTTGACCAACATTTGATCACGCATCAGACGGTGAAACGATTTAAATGTTCGAAATGTGATTACGTGACGAACGTCGAAAGGAAACTGAAATCGCATTTTGGGATACATATTGCGGCGAAACGATTTAAATGCTCGACATGTGACTTCATGACGAATAaccaatattgtttgaaaaaTCATTTGGACACACATCAAACTATGAAACAATTTAAATGCTCGGAGTGCGACTACGTGACGAATTTAGAAAGGTATCTAAAAACGCACTCTAAGGCACATATTGCTGCGAAACGATTTAAATGCTCGACATGTGACTACGTGACGAATATCAAACAGAGTTTGGAACGGCATTTGGAAACGCATCAGACGGAGAAGCGATTTAAATGTTCGGAATGCGACTACGTGACGAATGTAGAAAGGCAATACGTACCATCCTTGTCAGATCATCAACTGACAATTTCAACTGAACCCGGGGCAATGTATACAATCGAACTTACGAATCACACAAACATACTTTCTGAAGAAACCAAACGATTCAAATGCGCCCAGAAACGACTGAAATGTTCAAAATGTGACTACGCGACGAACAGCGAAGGCAATTTCAAAAAGCATTTGGACACGCACGAGGAAGCAAAGCGATTTAAATGTTCGGAATGTGACTACGTGACGAACGTCAAAAGATATCTTAAAACGCATTCCGTGAGGCACGTTATTGCGCCACGATTTAAATGTTCGAAATGTGACTACGTGACGAATACTAAGAGCGGTCTTCAGAAACATTCGGAAACGCATGAGACGGACAACCACTCTAATTGTTTGAAATTTGACAACGCGACGAATTCCGAAACACTGCGAGCCGGCGGAATATGTACAGTCGAACTCACGAATCACACGAACATACCCTGTGAAGAAACAAAACGATTCAAATGCACGCAGTGCGACTACGCCACGAATTTCAACAGTTTTTTCAAAAGGCATATAGACACGCATGAGACGGTGAAACAacttaaatgttcaaaatgtgaCTACGCGACGAACAGCAAGGGTAATCTCAAAACGCATTCGGACACGCATGAGACAGGGAAGCAATTTAAATGTTCGGAATGTGATTACGTGACGAATGTCGAAAGGTATCTTAAAGCGCATTCCGGGGTACATCTTGCGGCGAAACGATTTAAGTGCTCGATATGTGACTAcgtgacaaatgtcaaaagtagACTGAGACGGCATCTGGATACGCATCAGACGGTGAAAAGTTTTAAATGTGCGAAATGTGACTACGTGACGAATGTCGAAATTTATCTCAAAGCGCATTCCGAGAAGCACGATACTGCGCCACCACTTAAATGTTCGGAATGTGACTACGTGACGTATATCAAGAGCACTCTTAAGAAACATTCTATTACTCATGAGACGTTTAAGCGTTTTAAATGTTCTTAA
Protein Sequence
MTISTESECSQYNYETIYEVKRKNDTDIRDRETKRHKCTQCDYATNVSSSFKKHLETHDTTKRFECSKCDYVTHVKRNFKLHLGSHLPTKRFKCSTCDFMTNKQYCFKNHLDTHQTMKRFKCSICDYATNVEVYLKRHFNRHGAVKRLRCSKCDFVTNYKASLKRHSVTHEIVKPFKCSKCDYATNSQVNLKRHLDTHETVKRFICLECKYGTNDKGNFEKHLDTHSTVMRFHCSKCDYATNVAAYLKSHTATHETLRLFKCSKCDYATNAKKYLNVHLDSHVTVKRFKCSQCDYATNNKGRLKTHFEKHKLPKRLKCSKCDFMTNYKGNLNKHLSTHEPIKRHKCSKCDYETNVRTNFKKHMDMHEGVKRFKCSKCDYATNFKFTFKRHSYTHDTVKRFKCLKCDYVTNVEAHLKSHLNRHETVKRFKCSKCDFSTKYKVSLRRHSDTHETIKRFSCSQCDYATNSKVKLKQHSDTHETVNRQCVPTSPDHQMTISTESECSQYNYETIYEVKRKNDTDLRDRETKRHKCTQCDYATNVSCSFKKHLETHDTTKRFECSKCDYVTHVKRNFKLHFGSHLPTKRFKCAKCDYATNFNYCLKRHLGTHQTMKRFKCSECDYATHVENNLKAHFGSHLPTKRFNCAKCDYATNHKSSFDQHLITHQTVKRFKCSKCDYVTNVERKLKSHFGIHIAAKRFKCSTCDFMTNNQYCLKNHLDTHQTMKQFKCSECDYVTNLERYLKTHSKAHIAAKRFKCSTCDYVTNIKQSLERHLETHQTEKRFKCSECDYVTNVERQYVPSLSDHQLTISTEPGAMYTIELTNHTNILSEETKRFKCAQKRLKCSKCDYATNSEGNFKKHLDTHEEAKRFKCSECDYVTNVKRYLKTHSVRHVIAPRFKCSKCDYVTNTKSGLQKHSETHETDNHSNCLKFDNATNSETLRAGGICTVELTNHTNIPCEETKRFKCTQCDYATNFNSFFKRHIDTHETVKQLKCSKCDYATNSKGNLKTHSDTHETGKQFKCSECDYVTNVERYLKAHSGVHLAAKRFKCSICDYVTNVKSRLRRHLDTHQTVKSFKCAKCDYVTNVEIYLKAHSEKHDTAPPLKCSECDYVTYIKSTLKKHSITHETFKRFKCS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-