Basic Information

Gene Symbol
-
Assembly
GCA_963170755.1
Location
OY720678.1:33879931-33880599[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.1e-06 6.1e-05 25.8 0.2 5 42 1 38 1 40 0.92

Sequence Information

Coding Sequence
ATGGCCAAAGCGGTATCAGTAGTACAAAAAAATacaatgtcattaagaaaagCTGCGGCAGTTTACGGAGTTAAACATACTGCTTTGTTTTACCGATTAAGGAAGCAGCCTAAGCTAGAAGTTTATTCATCAAAGCACACATTTCGGCAGGTGTTTAACCAAGAACAGGAGCAGATGTTGGTGACTTATGTTTTGACATGTTCAAAGCTTCAGTATGGTCGTTCATATAAAGATTTAAGAATCTTAGCATTTGACTATGCAAAGGCACTTAAACGCAAATATCCAGCAAGTTGGGACGTTAATAAGATGGCAGGAGTGGACTGGGTTCAAAGTTTTATGAAGCGACATGTAAATCTGAGTTTAAGAAAACCAGAAAATACGAGCCTGGCACGGGTGACTGGATTTAATCTAAAAGCCGTAACCAAATTTCAAGAAAATCAGTTAAGTGCTTATAACAAATGTAACTTTGGACCCAACAAAATCTTTAACCTGGATGAGACAGGTATCTCGACAGTCGTGGATGCACCAAACATAATAGCTCAGAAGGGTGTTAAGCAAGTTGGGCAGGTTACATCGGCAGAGAGGGGCGCACTCGTGACCATGTGTGCTATCGTGACTGCTGATGGGAACAGTTTGCCACCAGTATTTATATTCCCACGAGGTAGATAA
Protein Sequence
MAKAVSVVQKNTMSLRKAAAVYGVKHTALFYRLRKQPKLEVYSSKHTFRQVFNQEQEQMLVTYVLTCSKLQYGRSYKDLRILAFDYAKALKRKYPASWDVNKMAGVDWVQSFMKRHVNLSLRKPENTSLARVTGFNLKAVTKFQENQLSAYNKCNFGPNKIFNLDETGISTVVDAPNIIAQKGVKQVGQVTSAERGALVTMCAIVTADGNSLPPVFIFPRGR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00415940;
90% Identity
-
80% Identity
-