Asol104314.1
Basic Information
- Insect
- Amphimallon solstitiale
- Gene Symbol
- PGBD4
- Assembly
- GCA_963170755.1
- Location
- OY720680.1:51515712-51523028[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.6e-08 2.5e-06 30.3 0.0 1 43 10 52 10 54 0.94
Sequence Information
- Coding Sequence
- ATGGCAAGAAGGCAATATGGAAAATGGTCTGAAGATGACATGAGAAAAGCTCTAGAAGAATATACAAGTGGaaaaattaagttcaataaatgttGCATGAAGTATAACATTCCTAAACCTACATTGAAAAGACACGTAGATGGGAAAGTGAAAAGGAGTGAATTGGAAAGAGCAGAACAGGCAAAGCAGAGGACaacacaaaaaaattcaaaaaatcgATGGAGAAAAGAAGATTTAGTGCACGTGATTTTCGATGATCTGGACAGCGATGAAGAACCAGAGGAAACACCGTTTGCTGCAATTGTTCGAAATGACGAGTACGCTGGGGtggaaaatgatataattaattataatctgCCTGACGGATCTGATTTAGAATCAGGCAATGAAGAAGAACAAGCTGTTCATAAACCTGATGATGATGTGGAAGAAAATGACTGGGACAGTGAGGATGAATTGCCTTTAGAGCAATTGCGTTCCTTGGcagcaaacaaaaacaaaaagaaaacaaaaaagagctACGTGTGGCGTAATGTGGATAGCATGTATGGACCAGCAACACTACCACTATTTTTaggatctaataaaataaatattcaaggaACTACTCCtgtagaatattttttgtctttattcACTGAAGATATGATGGATGATATCGTATTTCAAACAAATGTATATGCAGGGCAAAATGGTAAACTAAATTTTGGTCTCACTAAAGaggaattgtttgtttttttgggtGTAAATTTAGTTATGTCTTGCATAAGATATCCACGAATACGTCTGTATTGGTCAAGTGATGAGGGCTTGAGAATGAATCTAATTGCAAACTCTATGTCTGTAAACAGATTCGAGTTGATCCTACGTTTTCTCCATTTTGTAAATAACGTCGATTTGAAAAAAGACAACACAGATAAACTAAAAAAACTTCGACCATTTCTGGACCAGCTGCAAGCCAATTTTGTTAATGCTGCAGATCCTGAAGAGTACCAATCAATTGATGAGCAAATAATACCTCTAAAAGGAAGATTAGGAATAAAACAATATCTTCCGAAAAAGCCGACAAAATGGGGTGTCAAAGTTTGGGTAAGAGCAGGTGTAAGTGGCTACATGCATCGGTTTGAAGTTTACCAAGGAGCTGCAGGAAACCGAGATGGAATAAGTGCATTGGGTGCATGTGCAGATGTAGTTCTTCGTCTAAGTGATGATTTACCCCAAGTAAACCATAAATTGTTTTTTGACAACCTATTTTGTTCACTACCACTCTTAGAAGAGCTAAAGCAAAGAGGAATATGGGCAACGGGGACTCTAAGATCCAATCGTTTACAGAATGCAAGTTCTGTATTGATGTCGGATAAAGACATGAAAAGACAGGGTAGAGGAACTGCAAATGTTATAAGTACAGAATCGGGAAACATTACAATAACTAAATGGCTAGATAATAATTCTATCTGCATAGCTTCTACCTGTGCAGGTCTAGAGCCACGGAATACAGTACAACGTTGGCAAAAGTCGTCCAACAGCGTTATTGAAATTAGTAGACCATTTTCtgtacaattttataataaaaatatgggtGGAGTAGACCTTCACGATCAACTTATTGCATTATATCCAATTCGACGAAGGAATAAAAGGTGGTACATCAAAGTATTCATGCATTTTTTAGATGTAACAGTGGTAAATGCttggatattgtttcgaaaaAATGGAAACAACAAAATGGACCTTCTAGAATTTAAAGCCAGTGTAGCAAGAGCTTTGATCAATATGGGTCAACACAGAGAGAATAAGAGAGGCAGGCCACGTTCTGCTACTCCACCTAGTATACTGAAAAAAAAGAAACCTATGAACCATGCACCTCCTGAAGTACGTGGGGACAGATTTGGACATTGGCCAAAATTGacagaaattaaaaatgcaaGACGATGCCATTCAAACGCTTGCAAAAGAAAaactaagtacatttgtaaaaaatGCAATGAACCGCTTTGTCCAGACTGCTTTGAATATTTTCATACCCAATATCGTTGA
- Protein Sequence
- MARRQYGKWSEDDMRKALEEYTSGKIKFNKCCMKYNIPKPTLKRHVDGKVKRSELERAEQAKQRTTQKNSKNRWRKEDLVHVIFDDLDSDEEPEETPFAAIVRNDEYAGVENDIINYNLPDGSDLESGNEEEQAVHKPDDDVEENDWDSEDELPLEQLRSLAANKNKKKTKKSYVWRNVDSMYGPATLPLFLGSNKINIQGTTPVEYFLSLFTEDMMDDIVFQTNVYAGQNGKLNFGLTKEELFVFLGVNLVMSCIRYPRIRLYWSSDEGLRMNLIANSMSVNRFELILRFLHFVNNVDLKKDNTDKLKKLRPFLDQLQANFVNAADPEEYQSIDEQIIPLKGRLGIKQYLPKKPTKWGVKVWVRAGVSGYMHRFEVYQGAAGNRDGISALGACADVVLRLSDDLPQVNHKLFFDNLFCSLPLLEELKQRGIWATGTLRSNRLQNASSVLMSDKDMKRQGRGTANVISTESGNITITKWLDNNSICIASTCAGLEPRNTVQRWQKSSNSVIEISRPFSVQFYNKNMGGVDLHDQLIALYPIRRRNKRWYIKVFMHFLDVTVVNAWILFRKNGNNKMDLLEFKASVARALINMGQHRENKRGRPRSATPPSILKKKKPMNHAPPEVRGDRFGHWPKLTEIKNARRCHSNACKRKTKYICKKCNEPLCPDCFEYFHTQYR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -