Basic Information

Gene Symbol
-
Assembly
GCA_963170755.1
Location
OY720681.1:53001501-53003795[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.6e-08 1.4e-06 31.1 0.0 1 40 22 61 22 63 0.93

Sequence Information

Coding Sequence
ATGCCAGTTCAAAGGAAAATTCGCAAAAATAAGGCGTTAGTCAAAAGAAAATTGTTTACTTATTCTGAAGAGTCTCTAAAAGAGTCACTTCATTTAATACGATCTGGTCAGATTTCAATTAGAGAGGCTAGTCGGCAATTCCAAGTCCCAAGAGCTACGCTTCAAAATAGATTACACGGTAGACGTACCGACCCTCTTAAAAAGACAGGTCCTCAGCCTATAATGACTATCGAAGGAGAAAAAAAGATTGCCGATTGGGCAATAAGCATAGCCAAATGCGGTTTTCCGATAAAAAAGGAAGACTTGCTTGAAACGGTCACCAAAATTGCTCGAGATACAGGGAAACTTGACCACTTTGTCAATAAAAGACCTGGTATCAAATGGTATAAAAATTTTCTAAAACGTCACCCAGAAATTTCCGTTAGAGAAGCTGAAGGAATTAATAAGTCTCGATCGGTAGTGACGGAGGAATTCGTACGGTCATGGTTTCGAGAACTCAACGAATTTCTTGAGAACAGAAACTGTAAAAACATCATGGAAGATCCTCAAAGAATATTCAACGGCGACGAATCTGGTTTCGCTTTATGCCCTAAGACAGGCAAGGTACTCGCGCCGCGTGGGTGGAAGAACTTATATCAGATAAAGTCAGGGAACGATAAGGAAAATCTAACAGTCCTTATAGTTTTTAATGCTAGTGGAAATATTTGTCCACCACTAGTTATATATCCATATATTAGACCTCCAAAAGCATTGGTAAAGAGTATGCCTGATAACTGGATTCTAGCCAAGTCGGAATCTGGCTGGATGCGTAGcgatatattttttgaatatatatgTAACGATTTTCATAGATGGTTAGATAAAAATGAAATAGAGAGACCTGTAATATTATTTGTAGATGGTCATAAAAGTCACCTGACATTACCTTTAAGCCAGTTTTGTGAAGAGAATGGCATAATACTATACGCCTTTCCTCCGAATACCACCCATATGCTTCAGCCTGCGGACGTGAGTGTCTTTAGGCCACTGAAACAAGAATGGAGAAATACAGTAAGAAGGTGGCAAAGAAGACCGGAAAACAGCAATGCTGttgttaacaaaataaatttctgttcaattttcCAAGAAACTTTGGAAATGACAAATATGAGAGAATGTATGATAAATGGTTTTCGAAAATGTGGCATATTTCCTTTAAATCCCGATAATGTTGACTACACTAAATGTGTAAAAAACACGTTAGAAAATCAACATAAACCAAAAAATAAATCCGACACTATCCTCACTACTAAAGATTTTAGATCAGCGGAGAAAGTAATAAAAGCGGTTGAACCTCGTCTCTATGAGTATGGTATAAATGTTAAAGTTATCAACAATGAAATAAAATACcttgaaaaaaatatgtttacacCTATTAACTTGACTGACAATCCTGAAGAGAATATTATAGATTTAGGTAATAAAGCAGTTGACATCGGATCAATAATATCTATGGATGACGTGAACGTCTTACCAGTACTTCTTTTGGATGACACTCAAAGAAATTGTGTTCAAGACATGCCAGATACAAATCTCGTTCCTATGACAATCTCAGAAACTATTTCTGAAACAGAAAAAGAAGCATCGATTTCGATTCCGCCTAAGCCGCAAACAATGATAATTCAGTCATCACCTCAGATAGAAGATAAATCTGAAAATGTATTAACTGAGCAGAATTTTGAGAATATTGAAAATCAAATTACTCAGTGCAGTAATAATTCAATCGAAAACGAAAATAATATAACTCCTGAACAACGAATATTTCGTGAGTATCCAGATAAAATAGCAGAAGAGACTACATCTCCTAGTACTCCATTTAGTCGTCATTTGGCGTTTCCAGTTCCCGTTGATCAAGCTGAAAATtccaaaaagaaagaaaaactccCTAGTGCCATTTCCTGTAAGCAGTGGAGAATATATtacgaaaaaaaggaaaatgagaagaaaaataaaattaagaatgtACGAAAGAGAAAGGAAATTAGAGAACTGAAAGAACAGACACGAAAACGGAAGAAGGTAAATGTaagtaataaagaaaaatattgtgaaattaaagaaaattatacTGAGAAAGAGAGAGTTAAATGTTCCCTCTGTGAAGATGATCTCTATAGCGAAACAGAAGAAGATTCGGAAAAAAATATTGGTTGCGACTATTGTCTGCGATGGTATCATTTAAGATGCACTGAATTTGCTGAATATGGTTATGACGGGGTTGCAACTAAAGAGTACACATGCGATTTATGTAAATGA
Protein Sequence
MPVQRKIRKNKALVKRKLFTYSEESLKESLHLIRSGQISIREASRQFQVPRATLQNRLHGRRTDPLKKTGPQPIMTIEGEKKIADWAISIAKCGFPIKKEDLLETVTKIARDTGKLDHFVNKRPGIKWYKNFLKRHPEISVREAEGINKSRSVVTEEFVRSWFRELNEFLENRNCKNIMEDPQRIFNGDESGFALCPKTGKVLAPRGWKNLYQIKSGNDKENLTVLIVFNASGNICPPLVIYPYIRPPKALVKSMPDNWILAKSESGWMRSDIFFEYICNDFHRWLDKNEIERPVILFVDGHKSHLTLPLSQFCEENGIILYAFPPNTTHMLQPADVSVFRPLKQEWRNTVRRWQRRPENSNAVVNKINFCSIFQETLEMTNMRECMINGFRKCGIFPLNPDNVDYTKCVKNTLENQHKPKNKSDTILTTKDFRSAEKVIKAVEPRLYEYGINVKVINNEIKYLEKNMFTPINLTDNPEENIIDLGNKAVDIGSIISMDDVNVLPVLLLDDTQRNCVQDMPDTNLVPMTISETISETEKEASISIPPKPQTMIIQSSPQIEDKSENVLTEQNFENIENQITQCSNNSIENENNITPEQRIFREYPDKIAEETTSPSTPFSRHLAFPVPVDQAENSKKKEKLPSAISCKQWRIYYEKKENEKKNKIKNVRKRKEIRELKEQTRKRKKVNVSNKEKYCEIKENYTEKERVKCSLCEDDLYSETEEDSEKNIGCDYCLRWYHLRCTEFAEYGYDGVATKEYTCDLCK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

90% Identity
iTF_00067285;
80% Identity
-