Aque004215.1
Basic Information
- Gene Symbol
- prdm10
- Assembly
- GCA_032357855.1
- Location
- JAUELO010000032.1:202533-257553[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 5e-05 0.025 17.4 0.4 2 23 1905 1926 1904 1926 0.96 2 12 2.7e-07 0.00013 24.5 2.8 1 23 1960 1982 1960 1982 0.98 3 12 0.00045 0.22 14.4 1.1 1 21 1990 2010 1990 2011 0.96 4 12 0.0044 2.2 11.3 0.5 2 23 2033 2054 2032 2054 0.94 5 12 0.00083 0.41 13.5 0.1 2 23 2067 2088 2066 2088 0.95 6 12 0.021 10 9.1 3.8 1 23 2105 2127 2105 2127 0.91 7 12 0.023 11 9.0 2.0 2 23 2136 2157 2135 2157 0.96 8 12 0.043 21 8.1 0.1 1 23 2164 2186 2164 2186 0.98 9 12 0.0022 1.1 12.2 5.1 1 23 2193 2215 2193 2216 0.96 10 12 0.0056 2.8 10.9 3.1 1 23 2221 2243 2221 2243 0.98 11 12 0.0038 1.9 11.4 1.7 1 23 2263 2286 2263 2286 0.97 12 12 0.00029 0.14 14.9 2.4 1 23 2308 2331 2308 2331 0.97
Sequence Information
- Coding Sequence
- ATGCAACCAACTGCACATTCGAATTCATCCTGTCTTCCAACTCGTGCATCATCAGGTTCGACAGCTACGAATTTGCTCTATCAGCATCAGCAGCCTCAATCATTGTATGGTCCTGTGACAACTTTACAACCATTTACAGCTGTTTTGCATTCTTCTTGTGTTTATCCTGCTGCTCAAAGAAATACTGGACCTCTTAGTCCTGCCCTCTTACCTACTCAAGGTAATAAAGTCAACGAATGGCAAACGAAAAACAACTCTCAAGGACAACAACAGCGAACCCAGCGGCAAATTTTTTACACTTCAAAGCCATCGTTTCTATGTGAACAACCACAAATCGCTCCTCCACCTCCTACCACTCCATCTCCATATTTTCTCACCTCGTCAAATTTTTGCCACGCGCCATATTCTCCAGACCACTATAACAATTCAGGGGTCACCCTAATATCCCAACCATATTTTAAACCACCAGAAATGCAGGCCCTTTGTCTTGTACACGATCGTCAAGTTATTTCCCAACAACAAACTCAACAATACAATCCGTATTACAACCTCAGTACTACGAATGCCTGCACCCTCCAGACTGTCACTGCCAACACTAATTTATTACCTAATCAAATGGGTTCCTATGCTCCTTTTGCGAACAACCAACTGCCTCTTTCGAATCAGATATTCCTTAATTCCACACCAAATCCCATTTTTAACCCACCAAAGGAAACTCGTTCGTCAGCGTCAGTGCTAGACTTTCCACCTTTAAAGTATCCAAGAAGCAAATATAATCCCATCACCAGCAAGATACCAACAGCTCTGCCGGCTTTATCTCGAGAGAACACAGATTGTCCACCtcatattgaaaaaatgtccACAACATTTAATATTCCTTCTACAGACTACAAAGATTTTTGTGCTGAGATCGTTCAAAACAGTCAAGCTAACTCTTCTTCTAAAACTCAGGAGGAACGATTTtcagatgaatcatcaactagtTTTGATTTCACGATCGAGGCTGAGAAAATGGTCTCTGCACTGTGCAATACGACTTCTTCGAATGACCTGTCGAAGATCGAAACTAGTAAGAACGAGTCTTCAACTATCTTCAGTGGAGCTGGTGATAATATTTCTGGCAAAAACACTTGGTTTTCGGATTATTCAGCTGATAATGCAAGGGTTGAGATCAGCTTTAGAAGGTCTGTTGCCACCCAGACCCAGGAACCCAATTTAGAAAAGTATCCTGAGCTCATTCGTAAAACGACACTTTGGGGCTGCAGTCAGGCAGAAAGTCTTCTGAATTCTGGAAGGTGTTatcgaaattacaaaaatgaatggTTAGCGAATCTTTCAGCCGCAACCAGAACAGCGATTACTAAATCTGCAACATGTTTTCCCGTTTTTGCTGGCGATCGAATCTTTGTGCAGGATTTGATGAACTCCTTATTGAGGATAAGCAACGGTTGGCTGATTCTTGATAATTACTTGAACAAGCAACACTACCCAAGTCTTAATGATAagtatgataaaaaattagtgaagTCCTTTCAAGATTGGGAGGGAAGTACTCACGAGTTATTGAAAAACATAACTAAGACGTTCCTCTATTTGGAGGAAAAAATCTCAGGTCAGGAAGAAAAAGACAAATCAGGTACTTCTGGAACTTTTCCTGGTGATATTTCAATGTACACATCCTGCGATCTTTTTGAGTCAGCTTTTAGCAAAACTAACTTAGCATCCGGATCATCAGTAAATCAAGAAtctcaaaatcttcaaaactttcaCTACTTGCCTGATCAGAAGAAGGAAACAAAGCTAAAAGGAAAGTGGACCATCACCGAAAACGTCCCATCTGGATTAGAGAATTCAAAAACCCTGGATGTATCTCTAAATCGACTCGATGCTGGAATTCACGTTAGTAGACTTCGAACCAAGGGGAATGTCTCTTCAATCAAAAGTACTTCACTCAACGCTGAGTTTTTTCATTTGAGGAACAAGGTCTTGGAGAATAAAAGTCCGGATTCTAACAAGTGGCACCTGAAAGAAAGAAAACAAGATTTCAATACAAACAGAACATCCAAACCATTGGACTCAGTTTTCAGAATCAAATTCGGAAGCGAAAACCAAGACGCTTGTTCCTCCCAGTTACCTAGAATCGATCCTATTTGCTCTAATTCTTCAGGAAACATGGATGCACTATATGTCAACACTAATAACTCTAATTATTCCACTTGTATTGGTAAGAAAAGGTGCTCTGACCCAAACTGTGAATCCAAATTGggtaaaatgttatcaaattctCTTTATCTAGGCGATTCCTCCTCTGGCCAATTGGAATTCGCTGGTATTCCAATCAACAAGATGACCCTACTGAGTCAAATTGAACCCAATACTGTTGTCACTAACAAAGAGGAGATGACTGCTAATCTTTCTGCCTGGTTTGCCAGCATGAGAAATGTTAACATTACAGGTGATCTTAATCTAAAAGTCGAAAATATAACTAGAAATTCACAAGAAGTCACCAGGAACAAAATGGATATGACGAGGCAACTCCAATTAGATGAAAATCGTCAGCTTTTATCACTCCAGAACATGCAGAGTATTCAAAGTGCACCCTGGAATGCCTGCAATCTACTCAGCAATCGAGCCAGTATTCATCAAACTCACGAGGAGTACGACAGTTCAGAAGATATTCGTATCTATATGAAACCAGGAAGTTATAACGTTCCCAAGAAAAAACACCAGAAAAGGTCCAATCGTAGATCTGACAACGCAGCTTCACGATTAGGAATTCGTAATCTCAACAAGGAGAGACCTGATCCTTCAACTTTTTGTGCAACTTCTCGAGTTGttactatgaaaaatattgataataattctAGTTCTAATCTTAGGATTACTTTTCCAACTAATCCTACAGTGTCTTCCTCTTCCACGAAAACTTCACCCCTAAATCTTCACAAGAGTGACTCCCCTTCTAAAGATGTGACTTGGAAAGCAGCTTGTGCTTCAGCTGAAATTTTATTAGAAGCCTTGCATGTCAAAGAATTAAGTCCACAAATGGAAGATAAGAGAAGTGATCAAAAGAACATGAATCTGTGTCAGAAGATGAGAGATCAGAATCAAATGATCAAAAATCAGGATAAAACCTTCAGAAACCAGGATCAGACATTCAGAAATCAGGATCGAATTACCTACGAACAGAATCAAAAGATGAGAGATCAGATTATAAGGAATCAAAGTCAAAAGCAACGACGTTCAAAATCTAGGAAGCGAAGGCAGGATGAAGATTGTGATGCTTCGAGCTACGAAGCTTCAGAAGATGATTCAGAATCATCTGGTAAAATGTCTCATGGAATTGGTGCAGTTGGTTTAAAGCAAAGTGATACTAAACTTGGCAAAACTAATGTTAAAACCGATTCTTGGTTGATAAGAACTTTGAACAATGCTAGCATCATGGAAATAAGACAATGTCGGGAAGATGAAGTGGCAAGTTCAGATTCCTTAAACAGTTCTTTTCATGAGGATGAACAGATTGATAGAGCTAATGTTGTTGCCTCTACTCTAACTTCTccgaatacagaaaaaattagaaagatcAGTCCCAAGAAACTGTTTCCCAATTTTGTAAAGAAGGAAGTCCCTAATGAAAATGTTGGAAAAGCTACTTACTCAGAGACAGTTCGTCGTTCTGCTGTTTCTTTAGGCAAAATTGAGAATGCGAAGAAGGAGCAGAATAGTGAAAATGAATCTATAATGTGTGGTACAATTTTACCACTCCCTGGAAAAAAGAATCATCGGAAGGACGTGGAGAAATCTTATCTTTTACACAAGTCCCGAAAAgcaatagcaaaaaaaaaactgaagaatCAGGAAGTGGAGGTTCAGTGTGaagataacttaaaaataaagaatcctGAAAATGAAACAAGTTTAGTTGGTAAATCTACTTTGGTAAAGGAGTATGGGAAAAGAAAGGATACAACAGTGATATtagatggaaaaaataaaaatgtagatagaGGTTGGTCTGTATGGTATAGTTCGAAAAGGAAACAGATGAGTCCTTTGGCTTTAAGTAAACTAGAGACGATTCATCAGACTCTTTGGCAAATGGAGGAAGCTTGTGTTTTTAAGTATCCTTCTTCTACCGGTCCTGAAACTTCTACATCGAGCAACATgATCGAGGATTACTGTAAAATTGTGAAGAACCCTATGTTTCTCGAGACAATTGGTTACAATTTGAAGAATCGCGTCTACAACAAAGTTGAACATGCAGTCAAAGATTTTCGAAGAATAGTCAACAATTCTAGGCTCTACCATAAGaacgatggtgatttttcatctaaaatcgaCACACTTTCCAAAAAGTTGGAGGAACTTTTTGAAGAGCATTTCGCAAATTTGGATTATGAAAACGCGATGAGTCCAAGAGATGTCGAGTATGTGGAGGACCAAACACGAGACTACACTCGCATGTTCTCCGTTTACGAGCCCGTTTCCTATTCCCCAAGAGCTTCCTCTCCTCTTTCAGAATTTGAACACCGCGTTAGTCCCCACGATCCTAATATGAGCTCAGCCGCAAGATATTCACCAACCCCAGTTCAATTGCCTCATTCCCCATTTCAAAATTCGGTCGTTGTCCTACAAAACCCATCTTCGCCGTTGATTCCTGCATCGGAGACGAATGCAAGGACAAACATCAACTTTGTGGCTCAATTGTCCGATCAGACTGCTTCTCAAAACATTCCGCAAAGCGATAACCCTGCGGACTTTGTCGATGGTAGTAGCGAGGAAAGTCTCGTTCCTGGGAATGAATTGATTCTGATGCAagGATCGACGCCTGAATTAGAACCTTCGGCCCCTCCGTTGATGCTCACCAGCCTACCTGGTTCCGATTTCGCTCTAGCTCGTGACTTCCTTGTGATGCACGACGATCAGATCAGTGTCATGAActcctttaaaaatcaaaacatagaATTAAACGAAAGCTACATCTCAAGTCCAATGCAGACTATAATTCCAAACGAGGAACTAGACTTGTGTGAGACAGCTCAGCCTAAGAAAGAATTATGTACTATGGAAATTGTTGACAATCTCCTGGAGCCGGAAGAAGATCAAGTTCCCAAGAAAAACGTTAGAAGATCTAAACGGCAGATAAACGATAAGAAGACTTTCTGGTGCAAAGAATGTGATAGCATTTGTGCAGATGTGGACGGTTGCACATCTCATAATGTTCAAACAATCGCTGATCAACCGGTTCCTTCGAGAGCGATAGCGACTCTACCGAGTTCTTATTTGTCTATTAATAAATTGAGTTCTAATGAAGCTGCGGGACCAGAATATGGAGTTTTCACCAAGAAAAGCATTCGGAGGCGAACAAAGTTTGGCCCGATTGAAGGAGTTTTGTGTGCTTATGATGGTTCGCCGTTTATTGACTCTTTacctttattgattgaaaatgatgaTGGAGAGTTCTTTAAAATCGATGTGTCGAACGAAAacacTTCAAACTGGATGCGTTTCGTGCGACCGGCTGTAACTTACAAAGAGCAGAATTTAATGATCTGTCAGCAGAACGAAGGAATATTTTTCCTCACCACGAGAGATATACTGCCAAAGGAGGAATTAAAAGCTGGGCCCAATCCGGAATACGCAAAAAGGAGAAATTTGTCAATTCTTGAACCGAATCCAAAAAACGCGAACGATTTGAATGGCGATGCGTGGCCGTGTTTTGAATGTAATCGCTTCTTTCCAACGTCAGAAAAACTGCAAAGTCATATGAACGTTCACGACAATCCGCGAAATGATTCGAAAGGAAGAAGTAAACGTAGAAAACTACACATCACATCAAACAAGCTCTTGAAAGTCGTCAACGATCAGGCGGTCCTCTATTCATGTCCACATTGTTCGAAAGTCTTTTCGCGAAGCTACAGTCTAAAACGCCACTTATTGATACATCCAAATGCAAAAGCGTCGCGTTACGAATGTCCAAAATGTGGAGAAAACTTCTTATATCCTCATAATCTGTGTCGGCATATAAAAGTTTGTGAAACCGGAAAATCTAAGGAAAAAGGCAAAGAGAATTCTGGTCAGAATTCTGCCGATTGGAAATGCACCGTTTGCGGGCTCACTTTTTATAAAGAGTCGCTATTTAATCTGCACAAACTTGCTCACAGTGTCAGTGGGGTGGAAAACTGGCGCAAATTTGTTGTTTGTCCCGAATGTGGAGTGAAATTCGAGAAACAGAACGAGCTTGTCAAACATGTATCGCAGCATGGGAAGTTTCCGGTGAGAAAAGCTGCGAACTCGTCTTCATCGGCTGGTTATAAATGCTCAATGTGTTACAAACGTTTCGCTACTAAAGTACGACTGCAACAACACTGTCTGGTTCACGGTGCTGAGGATCAGAAACCACTGCCGTGTAATATCTGCTTGAAGAGGTTCATGAACAACTCTGCACTTTCCTGTCATCTGAAGACACACAGACAGGAGAAGCAGATGTTTGAATGTCCGATGTGCAAGGAGCTTTTCGaccaaattttaatgttgaaagacCACGTCGAAACTCACAGAGATCAAGACGATACATTTACCTGTCCACACTGCCAACGAAATTTCACCAAATATTCCGTTATTCGTAAACACATTAGAGCGCATCATTGTGAACGGAAGCATAAGTGTACATTCTGTGTGAAACGTTTTCCTACTGTGGATAAATTACGGATGCATTTGTTGCGACACTCCGATCATAGGGAATTTCAATGTGCTGTTAATCCAACGGAGTACGATCGCTTTATCTACAAATGCCATCAGTGTTTAGTTGGTTTCAAAAGAAGAGGAATGCTCGTGAATCACTTAGCGAAAAGGCATCCAGATGTACCACCGGAATCTGTACCTGAActtaatttacctattttaagACAGACGAGGGATTACTACTGCCAGTATTGCGAGAAGGTTTACAAGAGCAGCAGCAAACGCAAGGCGCACATTATGAAAAATCATCCTGGTGCTGCATTGCCACCAAGCAATCGCCACAAAGAAACGGACATTCCAGGCCTGCCCAATTCTACTTTTAGTCAAACCGTAGGAAGTATTACGACAACTCCTCAGGGTTGTCAATGGTGTCACAAGCAATATGCTAGTAAGCTAGTGCTGAGCGATATCAATTTCATAATGACCGACAGCGTCTCGGCTTGCGACGTAGATGAGTTTACGAAACCCAGGATCTTTAAAATATCCGACGATGTGGACCTAATCAGCGGTGGATTGGACTCGGTAGCACGAAACGAAAGCTGTGCTTGTCGCTGCCGTTACCATCTTGTAAGACACAGACAAGGGCGAAAGAACCAGCGAAAGCTCTCCGTCTATGAGCATTTGGAACGCAGCTTGTTGGCGTCGACGCGAAACGTCGGTGCTCACCCTGAACTGGGTGCCATCTCTTTAATCGCCCGTTCGACGTTCAAAACGTCCTCGGGAGTAGTGAAAATTTGTCGAAGTGGAGCGGAGTCCCACTCTAAAAAGGGTGTTCCCTCCCATTGA
- Protein Sequence
- MQPTAHSNSSCLPTRASSGSTATNLLYQHQQPQSLYGPVTTLQPFTAVLHSSCVYPAAQRNTGPLSPALLPTQGNKVNEWQTKNNSQGQQQRTQRQIFYTSKPSFLCEQPQIAPPPPTTPSPYFLTSSNFCHAPYSPDHYNNSGVTLISQPYFKPPEMQALCLVHDRQVISQQQTQQYNPYYNLSTTNACTLQTVTANTNLLPNQMGSYAPFANNQLPLSNQIFLNSTPNPIFNPPKETRSSASVLDFPPLKYPRSKYNPITSKIPTALPALSRENTDCPPHIEKMSTTFNIPSTDYKDFCAEIVQNSQANSSSKTQEERFSDESSTSFDFTIEAEKMVSALCNTTSSNDLSKIETSKNESSTIFSGAGDNISGKNTWFSDYSADNARVEISFRRSVATQTQEPNLEKYPELIRKTTLWGCSQAESLLNSGRCYRNYKNEWLANLSAATRTAITKSATCFPVFAGDRIFVQDLMNSLLRISNGWLILDNYLNKQHYPSLNDKYDKKLVKSFQDWEGSTHELLKNITKTFLYLEEKISGQEEKDKSGTSGTFPGDISMYTSCDLFESAFSKTNLASGSSVNQESQNLQNFHYLPDQKKETKLKGKWTITENVPSGLENSKTLDVSLNRLDAGIHVSRLRTKGNVSSIKSTSLNAEFFHLRNKVLENKSPDSNKWHLKERKQDFNTNRTSKPLDSVFRIKFGSENQDACSSQLPRIDPICSNSSGNMDALYVNTNNSNYSTCIGKKRCSDPNCESKLGKMLSNSLYLGDSSSGQLEFAGIPINKMTLLSQIEPNTVVTNKEEMTANLSAWFASMRNVNITGDLNLKVENITRNSQEVTRNKMDMTRQLQLDENRQLLSLQNMQSIQSAPWNACNLLSNRASIHQTHEEYDSSEDIRIYMKPGSYNVPKKKHQKRSNRRSDNAASRLGIRNLNKERPDPSTFCATSRVVTMKNIDNNSSSNLRITFPTNPTVSSSSTKTSPLNLHKSDSPSKDVTWKAACASAEILLEALHVKELSPQMEDKRSDQKNMNLCQKMRDQNQMIKNQDKTFRNQDQTFRNQDRITYEQNQKMRDQIIRNQSQKQRRSKSRKRRQDEDCDASSYEASEDDSESSGKMSHGIGAVGLKQSDTKLGKTNVKTDSWLIRTLNNASIMEIRQCREDEVASSDSLNSSFHEDEQIDRANVVASTLTSPNTEKIRKISPKKLFPNFVKKEVPNENVGKATYSETVRRSAVSLGKIENAKKEQNSENESIMCGTILPLPGKKNHRKDVEKSYLLHKSRKAIAKKKLKNQEVEVQCEDNLKIKNPENETSLVGKSTLVKEYGKRKDTTVILDGKNKNVDRGWSVWYSSKRKQMSPLALSKLETIHQTLWQMEEACVFKYPSSTGPETSTSSNMIEDYCKIVKNPMFLETIGYNLKNRVYNKVEHAVKDFRRIVNNSRLYHKNDGDFSSKIDTLSKKLEELFEEHFANLDYENAMSPRDVEYVEDQTRDYTRMFSVYEPVSYSPRASSPLSEFEHRVSPHDPNMSSAARYSPTPVQLPHSPFQNSVVVLQNPSSPLIPASETNARTNINFVAQLSDQTASQNIPQSDNPADFVDGSSEESLVPGNELILMQGSTPELEPSAPPLMLTSLPGSDFALARDFLVMHDDQISVMNSFKNQNIELNESYISSPMQTIIPNEELDLCETAQPKKELCTMEIVDNLLEPEEDQVPKKNVRRSKRQINDKKTFWCKECDSICADVDGCTSHNVQTIADQPVPSRAIATLPSSYLSINKLSSNEAAGPEYGVFTKKSIRRRTKFGPIEGVLCAYDGSPFIDSLPLLIENDDGEFFKIDVSNENTSNWMRFVRPAVTYKEQNLMICQQNEGIFFLTTRDILPKEELKAGPNPEYAKRRNLSILEPNPKNANDLNGDAWPCFECNRFFPTSEKLQSHMNVHDNPRNDSKGRSKRRKLHITSNKLLKVVNDQAVLYSCPHCSKVFSRSYSLKRHLLIHPNAKASRYECPKCGENFLYPHNLCRHIKVCETGKSKEKGKENSGQNSADWKCTVCGLTFYKESLFNLHKLAHSVSGVENWRKFVVCPECGVKFEKQNELVKHVSQHGKFPVRKAANSSSSAGYKCSMCYKRFATKVRLQQHCLVHGAEDQKPLPCNICLKRFMNNSALSCHLKTHRQEKQMFECPMCKELFDQILMLKDHVETHRDQDDTFTCPHCQRNFTKYSVIRKHIRAHHCERKHKCTFCVKRFPTVDKLRMHLLRHSDHREFQCAVNPTEYDRFIYKCHQCLVGFKRRGMLVNHLAKRHPDVPPESVPELNLPILRQTRDYYCQYCEKVYKSSSKRKAHIMKNHPGAALPPSNRHKETDIPGLPNSTFSQTVGSITTTPQGCQWCHKQYASKLVLSDINFIMTDSVSACDVDEFTKPRIFKISDDVDLISGGLDSVARNESCACRCRYHLVRHRQGRKNQRKLSVYEHLERSLLASTRNVGAHPELGAISLIARSTFKTSSGVVKICRSGAESHSKKGVPSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -