Aque007582.1
Basic Information
- Gene Symbol
- -
- Assembly
- GCA_032357855.1
- Location
- JAUELO010000085.1:6975792-6993736[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.5e-05 0.012 18.3 0.7 1 21 18 38 18 39 0.95 2 11 0.0002 0.098 15.5 0.5 1 21 88 108 88 109 0.95 3 11 0.53 2.6e+02 4.7 0.4 1 13 117 129 117 131 0.83 4 11 7.6e-05 0.038 16.8 2.2 1 21 164 184 164 185 0.95 5 11 0.0006 0.3 14.0 0.4 1 22 209 230 209 230 0.96 6 11 0.21 1.1e+02 5.9 0.2 1 9 238 246 238 250 0.86 7 11 2.6e-05 0.013 18.3 1.3 1 19 260 278 260 279 0.98 8 11 0.0022 1.1 12.2 0.5 1 21 300 320 300 321 0.94 9 11 5.8e-06 0.0029 20.3 3.7 1 21 347 367 347 368 0.95 10 11 0.00042 0.21 14.4 0.1 1 21 385 405 385 406 0.96 11 11 0.00018 0.088 15.6 2.6 2 20 413 431 412 433 0.93
Sequence Information
- Coding Sequence
- ATGTTTACAGTCAGCCCCGCAATGGAGGGTGGTTTGACAGGCGACCTGAGATTTCGATGCGTCATGTGTGGACGAGGATATAGATCTCGAAGCTCATTAACTCGCCATTCACGTTATGAATGTGGCGGATTGGGATCGAGATACACATTCACATGCACTCTCTACGTGGCCTTCACAGCGGGCGGAAGCAGAGATCATCAATATTCAAATTACTATGGTGGTAATATATTCCACGTACGACCGAAGACTCATCATCCAAATTTTGAGTGCCCAAAGTGTGGCAAAACATACAAGGCCATGAATAATATGTCTCGGCACTTGAAATACGAGTGCGGACTTGAAGCAAAATTCAAATGTCCATATTGCCCTGCTAGATCAAAACAGCCAGCTTTTTGGGGTGATTATGCAGTCTCTGAAGGATTATCTGGTCAACATTACGGAGAATATCGAGATCCACTCAACGATCCAATCCTTGGGCATTCAGGTGAATATCGTTGCCAGTACTGTAACAGTCCCTATTCTACTACCAGCCACCTGAAAAGACATATAACCAGAGGTTGTTTTAAGGATCCATCTTTTTCGATGGAGGAAAGAAAAACCATGAACCTTATAGAATCGAGAAATTTCGTTTGTCCAAATTGCTCCCAAGGATACAAAAATAAACGTACCTTGGACACTCATTTGCGATCAGTTTGCGGCCAAGAACCTAAATATCAATGTCCTTATTGTGGATTGAGGAGTAGCATGACTTTTGCGACTGATGTCGGTGTTCGATCCTACACCTGCAATTTCtgtgggaaaatttttaaaaatctcagaaGTTTGAACAAACATTCAGGGAATACCTGCTATTGGAATCCTCAATCTGGAGGATATCAAAGTCAACGCAAGAAACCGTTTTCTTGCTACGAGTGTGGAGCAGCTTATACAAGAAAATCTGGATTAAATTTTCACATCAGGCATGAATGTGGTAGAGTTCAGCAGTATAGAAGAATCCTTCCTTTTGAGAATGATGATAGTGCCGAAATCAATCGAGCACACACCTGTCATTACTGTGGAAAAAGTTTTACAAGAATTGGGTTTTTGACAAAACATCAGAATAAATATTGCTACTGGAATCCCAAATCTTCTGATTATGGAAAACATAGACCATACATTTGTCCCATTTGTGGAGCAAGTTACTCTAAGCAGagtattttaaattcacatttaagATTTGATTGTGGCAGAACACAAAAATGTAACGAATGTGGAAAGACATTTTTGCACAGTAGCAGTCTTCGAAAACACAAAACTCGAGCTTGCACATTTTGTTCAACTTTCACGAATATAACAGAAGCTGAGTTCGAGACTATTGCTTCTGAGTGGTTCAGATTTGCAAGACAAAGACTCGTCAGAGAAAGCTTGAAAATGGCTCAAAAACCAGAACAACAGTTCTACAATAACTAa
- Protein Sequence
- MFTVSPAMEGGLTGDLRFRCVMCGRGYRSRSSLTRHSRYECGGLGSRYTFTCTLYVAFTAGGSRDHQYSNYYGGNIFHVRPKTHHPNFECPKCGKTYKAMNNMSRHLKYECGLEAKFKCPYCPARSKQPAFWGDYAVSEGLSGQHYGEYRDPLNDPILGHSGEYRCQYCNSPYSTTSHLKRHITRGCFKDPSFSMEERKTMNLIESRNFVCPNCSQGYKNKRTLDTHLRSVCGQEPKYQCPYCGLRSSMTFATDVGVRSYTCNFCGKIFKNLRSLNKHSGNTCYWNPQSGGYQSQRKKPFSCYECGAAYTRKSGLNFHIRHECGRVQQYRRILPFENDDSAEINRAHTCHYCGKSFTRIGFLTKHQNKYCYWNPKSSDYGKHRPYICPICGASYSKQSILNSHLRFDCGRTQKCNECGKTFLHSSSLRKHKTRACTFCSTFTNITEAEFETIASEWFRFARQRLVRESLKMAQKPEQQFYNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -