Aque020564.1
Basic Information
- Gene Symbol
- -
- Assembly
- GCA_032357855.1
- Location
- JAUELO010000282.1:6565887-6572218[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.019 9.5 9.2 2.1 1 23 429 451 429 451 0.97 2 13 0.044 22 8.1 1.8 2 23 485 506 484 506 0.95 3 13 3.6e-05 0.018 17.8 3.7 1 23 562 584 562 584 0.97 4 13 0.036 18 8.4 1.3 2 23 588 609 587 609 0.95 5 13 0.00036 0.18 14.7 3.5 2 23 662 683 661 683 0.95 6 13 2.9e-05 0.014 18.1 3.8 1 23 732 754 732 754 0.97 7 13 0.00039 0.19 14.5 1.1 1 20 759 778 759 780 0.94 8 13 0.034 17 8.4 0.3 2 23 791 812 791 812 0.97 9 13 2.1e-05 0.01 18.6 0.6 2 23 851 872 850 872 0.97 10 13 1.9e-05 0.0093 18.7 1.6 1 23 877 899 877 899 0.95 11 13 7.7e-05 0.038 16.8 2.8 1 23 905 927 905 927 0.98 12 13 3.3e-06 0.0017 21.1 0.4 1 23 943 965 943 965 0.95 13 13 0.0077 3.8 10.5 0.4 1 20 983 1002 983 1004 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTAGAGATAAATACGTCGGAGCCAACGCAAAATGAGGAGGGAATCGTATCTGCGATGGAAATATGCCGTGTTTGCCTGCTTGGAAATGTTGTGATGCGAGACCTCTTCCATGAGAGTGAGGTGAATTCCTTATCCGCTAAGGCCATGAGCTTCGCCAGTGTTAAGaTGATACCGGGAGACGGTCTGCCGGGACAAGTGTGTTGCGTTTGTGCAGACAAACTCGAATCAGCATATGACTTCAAATTGCAAGTCGAACAAGCCGACAGTGTCCTAAGAGAAAAATATGATACACTTAACATTAAAGAAGAACTTTTTTTCAACGATGTCGAAGTTCATTTGGAAGGAGAGAGAACCCGGACGAGGCGTGAAATAAATGACAATGGTGAATATGTGGAAACAACTGAATCACTGCACGATGTTGGCAGAGATACACTTTTGAAGGATCATCTCGCTCTTTTACAAGTCCAAAAAATGGCAGAACAAGAAAGCATGTTACAACAAGATGTAGAGCACTTGCAAGAACATCTTCAAGAAGACTTGCAAGAGGAACACCTCCACGAGGAACATTTACAAGAAGAGCATTTACAAGAGGAGCATTTGCAGGAGGAACATCTGCAAGAGGAAGATCTCCAAGAAGACTTACAAGAAGAGCACCTGCAGGAGGATCATTTGAACGAGGAAGACTTGCAAGAAGAACACCTTCAGGAAGAAGATTTACAAGACGAACACTTACAAGAAGAAGACTTGCAAGAAGAGCATTTACGAGAAACCGAAATCGTGGGAATACACAAGGAATCAGATGAAGCAATCTTACAGTTGCAACAGATTTCGCAATCTGTGCATCACTTTGCCGATCAGAGTGACATCAAGGATGAAGGACTCCATGAAACAGAATCTGCAAACATGCAAGAGCAAACTTATCTTGATCAACCAGATTGCTCTCAGATGAGTGACGATGATTTTAACAACGACGAACCCTTCGCTGCTACACAAGAGTCTATGGAATACTCTTCATCCCCAGCGAAAGAACGAGAAATGGATCAAGAACAGGATCAGGACCAGTTCCAACAATCGACAGAAGACGCATCCGTTGAGCAGGTAAATCTCAACTTGGAACAAGAATCGCCCCAGAATGAAACTCGTAGAAGCAAACGCAAAATCTCCCGTCGCTCAACTACCTCTGATCACAACTCTGACGAAGAGAATTACTTCGAAAATCTGAACCTCAGTTCACGTCTAAAGAAGACTCAGATGGATAAATCAGAGAAGGTCTTCTTCATGTGTTACCTCTGTGATAAGGAATTTCTCTCCAAGGAAGTTTTAAAAGAACACATGCACTCACACGAGGAAGTGAGAAGAACCCTTTCCTTGAAAAAGGTGGGAGACAAACCTCAAAGGGCCGCGACACTTCAGAAAACAACAGCATCACAAAAAAAACCGAACAAATGTCCTCACTGCGGAAAAGAgtatctctacataatctcctttaaTAAGCATTTGAAGCAACATGAGAAAGAAAACGGTGGCATGAAGAGCGAATCAATGCCACTAGAAGTTAACTTCCGCGTGGATGACGATTCTGTTGATTTTCCTGGGTACGCGAACTCTCCCGGTTCTGATGACGAAAACACTGAAACTTGCTCAGATTCAGATGAAGAAGAAAAGGAGGAAGAACATAAGTGCAAGAAATGCCCAGAGAAATTTAGTACGAAACGAGCGCTTCGGAAGCACGCTATTAAACACACAAGTTTGAAATGCTCTGTCTGTGAGAAGCAATTTGACTCTATGGAAAAGATGAAGGAGCACCGCACCCAACACGTGACGGAAGGGGTTTTAACGGAAGAAGATTTGAAGAAGGACCTCGAGAACTTGGTAGATCTTTTGCAAGATGAAGATGATAAAAAGTCTCTCTCTAAACCAGAGACTGACACCGGCAAGAACAGttGTAAGAGagcttataataaaaaagttttggaatGCGCGACCTGTAATAAGAAGTGCAGTTCTAAGCAATCCTTAACGAAACACATGGAACAGCATGTCAAGGATGAAAAGGGAGATAAAGAAAAGATGAAACAAGAAAGGTCTATGAAACAAGATCCTGACAGAACACTGGATGACGACGATGACGACGATGATCTAGATGATGATTTCGAAAGCGGTCTGGATTGGCCGATGGACACTCACGAGTGCCCCACTTGTAAGAAGAGATACAGTACCAAGAAATCTTTACTAAGGCACCAACTTTTACACGAAGAGCCGAACTTTGAGTGCGACATCTGCAACGTGAAATTCTACCGCAAAGATAAACTCAAATCCCACTACGATAAATGTTCAGAGAAAAATCCGGATCAGGTACGAAAGTGCAACATCTGCGGGGATAGTTTCGAAAATAATGAAATCCTGCGCGAGCATCGAGCAAAACACGTGACTGAGGGAATTTTGACGGAAGAGGATTTAAGAGAGATCGAACCTAGGCCTGAGGAAAGAAGGTCGGGTGAAAAAGTTGCGAGAAAGAGAAGGACAGATATTGTGGGTCTCGAATGTACAGAATGCAATAAACAATATACTTCTCGAAAAGGCCTTTTGCGCCATATCCAAGTCCACGAAGGAAAGAAATACCTCTGCGATATTTGCCCAAAGAAGTTCTACAGAAGAGAACACTTGAAAATTCACGTAGCGAAGCACAATATGATCAAGCCTTACAAATGTAATCGTTGTACGAAGCGTTTTATTAAAGAAGAACAGCTGACAAACCACCTTTCAAAACACGACAGGACCTTCAAGAAAAACAAGGAAACTGATAGTTCGAAGAGATTCCTCTGTGAAATCTGTTCAAAAAGCTTCACTCAATCGACAACCTTGATTGCGCATCTTAGAGCGCATAACGGAATAAAGCCTTATGAACACGTGTTTATCCACACGGGACAGAGACCTTATGCTTGTCCGACTTGTGATCGAAGGTTCAATAATAATGGAAGTCGATATGCACACAGTAAGAGATGCAAACAAAACTTGTTGCAGAATCAGAGTCGGGTTCAGATTTTACCACCACCACCTCTTCAGATGCAACAGAGGATACATCAAACGCTCGTCCAGTCGCCGATGATCAAGTCCCAAAATATTAAGACGATCACAATTGCCAGACAGGAACCCCTGACGACTCAACAGGTTCTGCAGCATCAGGAAATTCTAATGCCACTCATTTTACCCTTGACAGTGACGCTCGCTGATGTGGGAGAGGAAGTCATTCTACCGGAAGGTACCAAGATCTTCACCACATCTTAA
- Protein Sequence
- MDAVEINTSEPTQNEEGIVSAMEICRVCLLGNVVMRDLFHESEVNSLSAKAMSFASVKMIPGDGLPGQVCCVCADKLESAYDFKLQVEQADSVLREKYDTLNIKEELFFNDVEVHLEGERTRTRREINDNGEYVETTESLHDVGRDTLLKDHLALLQVQKMAEQESMLQQDVEHLQEHLQEDLQEEHLHEEHLQEEHLQEEHLQEEHLQEEDLQEDLQEEHLQEDHLNEEDLQEEHLQEEDLQDEHLQEEDLQEEHLRETEIVGIHKESDEAILQLQQISQSVHHFADQSDIKDEGLHETESANMQEQTYLDQPDCSQMSDDDFNNDEPFAATQESMEYSSSPAKEREMDQEQDQDQFQQSTEDASVEQVNLNLEQESPQNETRRSKRKISRRSTTSDHNSDEENYFENLNLSSRLKKTQMDKSEKVFFMCYLCDKEFLSKEVLKEHMHSHEEVRRTLSLKKVGDKPQRAATLQKTTASQKKPNKCPHCGKEYLYIISFNKHLKQHEKENGGMKSESMPLEVNFRVDDDSVDFPGYANSPGSDDENTETCSDSDEEEKEEEHKCKKCPEKFSTKRALRKHAIKHTSLKCSVCEKQFDSMEKMKEHRTQHVTEGVLTEEDLKKDLENLVDLLQDEDDKKSLSKPETDTGKNSCKRAYNKKVLECATCNKKCSSKQSLTKHMEQHVKDEKGDKEKMKQERSMKQDPDRTLDDDDDDDDLDDDFESGLDWPMDTHECPTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKSHYDKCSEKNPDQVRKCNICGDSFENNEILREHRAKHVTEGILTEEDLREIEPRPEERRSGEKVARKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCNRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNLLQNQSRVQILPPPPLQMQQRIHQTLVQSPMIKSQNIKTITIARQEPLTTQQVLQHQEILMPLILPLTVTLADVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -