Basic Information

Gene Symbol
-
Assembly
GCA_032357855.1
Location
JAUELO010000085.1:5778703-5863042[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.00033 0.16 14.8 1.4 1 23 612 635 612 635 0.97
2 17 0.00068 0.34 13.8 1.3 1 23 642 665 642 665 0.96
3 17 0.59 2.9e+02 4.5 4.2 1 23 682 705 682 705 0.95
4 17 3.3 1.6e+03 2.2 0.3 1 12 712 723 712 728 0.82
5 17 0.0045 2.2 11.2 3.3 2 21 934 953 934 954 0.94
6 17 0.00096 0.48 13.3 2.3 1 21 1098 1118 1098 1119 0.95
7 17 0.00031 0.15 14.9 5.8 1 23 1127 1150 1127 1151 0.95
8 17 0.012 5.7 9.9 2.3 1 23 1162 1185 1162 1185 0.95
9 17 0.0046 2.3 11.2 0.4 1 23 1192 1215 1192 1215 0.96
10 17 0.0044 2.2 11.2 2.9 1 21 1308 1328 1308 1329 0.95
11 17 0.0042 2.1 11.3 4.2 1 21 1482 1502 1482 1503 0.96
12 17 1.4e-05 0.0069 19.1 5.2 1 23 1511 1534 1511 1535 0.96
13 17 0.00054 0.27 14.1 0.6 1 23 1546 1569 1546 1569 0.96
14 17 0.00083 0.41 13.5 1.0 1 23 1576 1599 1576 1599 0.97
15 17 4.1e-06 0.002 20.8 0.5 1 21 1660 1680 1660 1681 0.96
16 17 0.0002 0.099 15.5 0.2 1 21 1799 1819 1799 1820 0.95
17 17 0.001 0.51 13.2 2.5 1 21 2186 2206 2186 2207 0.95

Sequence Information

Coding Sequence
ATGCCAAGAGCGCATCAAGGAAATCAATACGATACTGCCGAAACTTTGGGCATGAAGGATGATATCATTCAGGgAGAACCGGATGTTGGCCCATATTCTTGTAATACTGCTCATATTTATGCTGGGAATAGTTCTGGTGCCAAGACTTTAACTTGCGAAATTGAATACAGCAATGACGAATCCTTGGATATCAAGCAAGAAGTCATCCAAGATCAAGAGTCACTTACATGCCAGAAACGTGATGAAGAATATGAGTCAAAGTTGACTATAACAGGGATAAGAGTAGctgatattttagtttttaacaaaccGCCGCTTCAAAAGAAGCAGACAATTCAGGAATCAAGACATAAACCGGAAAGGGAATACAAATGTGTGAAAAATGGTTGTCATGCAAAAGTGTACACCCCCAGCTTTGACAGCAATTTTGTGATTGATCAAGATTTAATTCATAATCATGCAAGAGATCTTAATATTGCTAGGCAAGCTGTCAATAACAACGCCAAACGAAAAGCTGTAGAAGAAGTGTTTGCAAGACCATCAAAAATTATTCACTCGGAATTAGAAACTAATATATTTTCATCGGGAATCACCTCACGTGACTTGGgctacattcgtaaaaacatctACGGAGCTAGACGTAGCGTTCTTCAAAGCCTACCTAAAGAACAAGAAGAAATATCCGAAAAAATTACAGTATCAACGAGAAGCGACGCAAATGCTTCGGTCGTTTCTACCCAAAAAGCTCTTGGAACGTCTATTCAAGGGAGAAACAAATCTTCACAAGATCCAGACGAAGTGATACCCAACTGTAGTCTCCGACCCGATCTAGAGAGACATCAGAGGGGAGAGTGCGATCATCTTTCTGAAGGAAATCAATTGGACGACAAATTTGTAAATACTATTATTTCCTCTGGCAACAATTCTAGTTCCAAAGATTTAACTTGCATTATTGAACACGACAATGACGAAACATTGAAAATCAAAGAAGAAATATTCCAAGatcaagaGGGACACGAAAAAGGAGAGCAAATTATTTGTTCAGATAGAAATCAATTCGAGGAAAAATATATAACTGAAGTTTCTTTTGACAATAATTCTGGCAACAACATTTTAACTACAATTAATTATGACAATGACGAATCTTTGGATATTAAGGAAGAAATTATCCAAGATGAATGGAATTCCATGAGCGAGTTGAAGAAATCAACAGGAGAACCGGCTGGTGGGTCATATTCTTATAAAACTGCTGATATTTCTTCTGGCAATAATTCTGATGCCAAGACTTCAGCTTGCACAATTGAATACGATAATGACGAGTCTTTGGATATCAAGGAAGAACTCATCCAAGGAAAGCAATCAGCCGAGAAGTGTAAAACTACTAAAACTTCTTCTGACAATAATTCTTGTGCCAAGACTTTAACTTACATGGTTGAATACGATACTGATGAAACTTTAGAAATAAAGGAAGAAATCATCCAAGGAAAGCAATCGGACGAAAAGTGTAGAACTACTAAAACTTCTTTTGACAATAATTTTGTTCCCAAGACTTTAACTTACATGGTTGAATACGATATTGATGAAACTTTAGAATTAGAGGAAGAAATCATCCAAGatGAACAGGATTCCAAGAGTAAGTTAAAGAAATCATCAGAAAGATTGGATGAAAGTCCATATTCTTGTCAAACTAGTCATATTTCTTCTGGCAATAATTCTGGTGCCCAGACTTTAACTAGCAAAACTGGATACAATGACGAATCTTCAGGTATCCAGGAAGAATTCATCCAAGATCGCGTTCATCAGAAAGACAATTCAAAGACATCACAAACCAAGTATACTTGTGAAAAATGCGCTCGGAATTACAGTTCTTTAGATTCTTTGAAAAGACATAAACGTTTAGAACACTCAGCAGTCAAACCACAATTTATTTGCGATATTTGCGGACACAAGACTAGTCTTAAATCTGACTTGTCGAGGCATATTTCTTCACGCCACGAGGGTCGCGTGCGTCAAAAACCAAACTCAGAAAAGTCTATATTAGTGCATAATTGCGACAAATGTTCTCGAAGTTACAGGTGGTTAGGTAGTTTAACTCATCATAAACGTTTAGAACATGCAGCAGTAAAGCCACAGTTTACTTGTGATATTTGCGGCCACAAAACTAAACTCAAAGatgaacagAATTCCAAAAGTGTGTTGGAACAATCAACAGGAGCACAAGATGGTGGCACGTATTCTTATAAAACTACTCGTGTTTTAAATAGGAATAATTCTGGTGACAACATTTTAACTATAGTTGAATACGACCATGACGAATCTTTGGATATCAAAGAAGAACTCATCCACGGTCGGCAGAGTGCTTCAAGTAGCACTAAGAATTCCGAGactaattcaaagaaatcaacAGCAAGACCAGACGATGGACAATATTATGATCTTTACTCTGGTCATATTCTGGAACTTAGAACTGTGTTTGTAAAACCCAAAAGGGAAGAGCACAGTATTATTTGTGAAGGAAACGTATTGAAGGAAAATTATATGGCTACTAACATTTCTTCTAACAATTCCGATGGCGAGACTTCAACTTGCATGATTGAATATGACCATGACACAACTTTGgaaataaaggaagaaaaaatcCAAGGTCAAGAGACATTTTCCGGACAGAAATGTGATGAAAAATATGAGACAAAATTGTATACTGCATATATTAGGGAAGCTGATATTTTTGGTGCTAAGAAAAAGATTCCGACGTGTAAGAAACAGAAAGTTCAGGAATCGAAAGTGGTAACGAATAACACATGCGAAAAATGTGCGCGAAGCTATAAATATAAATCTCATTTAAATCGTCATAAAAAATTCGAATGCGGAGTTATGCCGCAATTCAGATATCAGCCGAGTCCTTTAACTAACACCAAGCGTTTCTATAATGATTCGAAGAAATCAGCAGAAAGACCAGCTGTTGAACCATATTCTGCTGTTCACTCTGGTCTCTTTTTAGGATTCGAAACCGTGTTTGTCAATCCCGAAAAGGAAGAGCACATTCTTATTTGTGAAGGAAATCCATTGGACGAAAAGTCTATGGCTACCGAAATTTTGTCGAACAATCCTGATGCCGAGACTTCGACTTGCATGATTGAATATGATTATGACACAACTTTGGAAATAAAGGAGGAAATCATTCATGatcaggAGACAATTGATAGGCAAAAATGTGATGAACAATATGAGACGAAATTGTATGCTGCACAGATGAGGGGAGCTGATATTTGTGGTGCTAACAAAAAGAACTACACATGTGACAAGTGTGCACGAAGCTATAAAAATAAGCGTGATTTGAAtcgtcataaaaaatttgaatgcggTGTAAAACCACAGTTCAAGTGTAACTTTTGCGACAGACGATTTAAACGGAATCTACACCTTCAACAGCATATAGTTCGCGTGCATCATAAAACCAACAAAAAAGCATCGCAAACAAAGTATAATTGTGACAAGTGTCCTCGAAGTTACTGTTCCTCAGATACCTTAAGTTTTCATATACGTTTAGAACATGCAGCAGTCAAACCACAATTTATTTGCGATATTTGTGGTTACAAAACTAACCTCAAACCTAGCTTGTCAAGACATATTTCTTCGAAACATCTCGGTCAACCGTGGTCAAAACGGAATCAGCCGAGTGCTTCATCTAACACCAAGCATTTCCATAGTGATTCGAAGAAATTGACAGAAAGACCAGATAGTGGACCACATTTCGCTCTTCACTCTGgTCGAGAGACAGCTGTAggccataaatttaaaaagaaatgtgaGACAAAACTGCATATCGCACATTTGAGGAAAGCTGATATTTGTGGTGCCGGGAAAAAGTTGCCGCCTCGTAAGAAGCAGAAAGTTGAGGAATTGAAACTGGAAAAGAATTACACATGTGAAAGGTGTGCACGAAGCTATAAAAATAAGCCTCATTTGAATCGTCATAAAAAATTCGAATGCGATCAGCCGAGTCATTCAACTAACACCAAGCATTTCCAGAGTGATTCAAAGAAATCAACAGAAAGACCAGATGGTGGACCACATTCTGCTCTTCACTCTGATcactttttggaatttgaaaCTGTGTTTGTCAAACCCGATAATAATGAGCACGGTCTTATTTGTGAAGGAAATCCATTGGACGAAAAGTCTATGGCTACCAAAATTTCGTCTAACAGTCCTGATGCCGAGACTTCGACTTGCATGATTGAATATGATTATGACACAACTTTGGAAATAAAGGAAGAAATCATTCATGatcaagaGGCAGTTAGTAATCAGAAATGTGATGAACAATATGAAACAAAATTGTATGCTGGACGTATGGGGGAAGCTAATATTTGTGGTGCTAAGAAAAAATTGTCGAACCGTAAGAAGCAGAAGGTTCAGGAATTGAAAGTGGAAAGTAATTACACATGTGACAAGTGTGCACGAAGCTATAAAAATAAACGTCATTTGTATCGTCATACAAAATTCGAATGCGGTGTCATACGACAGTTCAGATGTGACTTCTGCGATAAACGATTTAAACGGAATCCACACCTTCAAAAGCATATAATTCGCGTGCATCATAAAACCAACATAAAGGCATCTCAATCAAAGTATAATTGTAACAAATGTCCTCGAAGTTATAGTTCCTCAGATGCCTTAACTTTTCATATACGTTTAGAACATACAGCAATCAAACCAGAATTTATTTGCGATATTTGTGATTATAAAACTAAACTCAAACCTAGTTTGAAAAGACATATTTCTACAAAGCATCTTGGCTGTACGCAGTCAAAACGGAatgaagAGACAGACACAGGCCAGCAACGCAAGGAAAAATATGAGACAATATTGAGTATCGCAGATATAAGAGATACtaatatttttgatgttaaaaacaGACTGCAGACCCATAATAAGAAGGAGCAAATTCAGGAATCAAAACCGGGAAAGATATACACTTGTGAAAAGTGTGGGCGAAGCTACAACCGTGAAGCAAATTTGACTCGTCACCAAAAATTAGAATGCGACGTCATACCACAGTTCAGATATCGACAGAGTGCGTCAACCACGAATTTGAAGAGTGATGCGAATAAATTAACAGAAAGAACAGATCGCGGACCATTTTCTGCTCTTCACCCTGgtcattttttggaattcgaAACCGTTTTTTGGACACCCGAGAGCGACGAGCCTAATCTTCTCTGTGTCGGAAATCAGTCTGACGAAAAATATATAACTGGGGATATAAAGGAAGAACTCATCCAAGatcaagaGACAGATCTCAAAGTAGCTAATATTTTTGCTGCTCAGAACAGACTGATGCCCCGTAATAGGAACCAGGTAATTGTGGAATCAAAACCGGAAAATAGATTCGCGTGCGAAAAGTGTGGGCGAAGTTATACTCAGGAAGGAAATTTAGGTCGTCATCTAAAATTCGAGTGCGGCGTCATACCACAGTTCAGATATCGACAGAGTCACATTTTGAACTTCGAAACTGGCTTTTGGGCACCTGAGAGCGAAGAGCCCAATCTTCTTTTCGAAATAAAGCAGTTAAACGAAAAGTGTATAACTACTGAAATTTCTTCTGGCAATTATTCTGAATCAAATACTTTTAGTTGCATGATGGAATACGAAAATGACAAAACTTTAGAAATAAAGGAAGAAATTATCCAAGatcAAAAGACAGTTAGATGCCAGAGAGCTGATGAAAAATATCACACAAAATTGTGTATAGCCGATAGAAGTGAAACACATATTTTTGCTGTGAAGAACAAACGGCAGCCCCATCAACACAGTGCCTCAAGGTATACCAAGAATTTCAAAAGTGATTTGAAGAAATCTACGGAAATTCCAGGTTGTGAACCATATTCTGCTCTTCACTCTGGTCACTTGTTGGAATTCGAAACGGTTTTTTGGACACATGAGAATGAAGAGCACAATCTTCATTCCGTCAAAAATCAGTTAAACGAAGAATATACAACTACTGCTTCTGGCATTAATTCTAAAGCCATGACTTCAGCTTACATGATTGAATACGGCAATGACGAAGCTTCTGATATAACGGAAGAAATCATCCAAGATAAACCGAATGCTTCAACTAGCACCAGGAATTTTAAGAGTGATCTAAGGAAATCAATAGGAAGACGAAGTGGTGGACCATATACTGCCCTTCACTGCGTTGACTTTTTGGAATTTGAATCTGTTTTTTGGAAACAAGAGAGGGAACAGCTCGTTCCTCTTTCCGCAAGAAAGCAGTTAACCAAAAACTGTATAACTGCTGAAATTTTTCCTGGCAATAATTCTGATGCCAATACTTCAAATTGCAGAATTGAATACGAAAATGACAAAACCTtggaaataaaagaaggaaacATCCAAGatCAAGAGATCGTTAGTAGCCAGAAATGTGTTGAAAGAAGTAAGAATAGATTGTCCAACGCACATATAAGAGAAACTAATGTTTGTGGTGCTAAGAAAAAACTGCCTACTCGTATAAAGCAAAAAGTTCAAGAATCGAGACTAGAAAAGAATCACACATGCGAAAAATGTGCACGAAGCTATAAAAGGCAATCAGATTTAAATAGTCATAGAAAATTCGAATGCAACGTCGTGCCACGGTTCAGATttcaacCGAGTGCTTCAAGTTACACCAAGAATTTCAAGATTGGTTTGAAGAAATCAAAAGAAAGACCCAGTTGTGGATCATATACCACTCTTCACTGCGGTGACTTGGAATTTCAAACTGTCTTTTCTATTGAATACGGAAATGACAACGCTAtggaaataaaagaagaaatcatcCAAGaaaaaaagaaaaaatctactTCAAATGTCCTTGCCGACTTCCAGTTCGTTGATTTCTCCGTTTCTGAATTGCCTACAATCCTTGCAAGGGAGTTAGATTTAGAAGATGATCAACCGGATTCTCAGAGCAAGCGGCCCAAAATTGGAGAAGAGGATGGCAGTCGTTATTCATCTGGATTTAAGCAGTTTGTAGTAAAGGAACTGATGAAAATCACGGCCCAATTGGAAAATATACAACAGAGTCAGCAACAACTTGTATCGAAGATCGAAGTAGTAGAAATTGAACCAAAAGAAGCAAACGCCATGGATAAATTCATGGAGGAATATTCGCTCAATTTGCCTTTCAAATCTGTGACAGAATTTGAGCACTTTGACTTAACTTTGAGATCTAATCCGATTGCCAGAAACAAATTCatgaACTCGCTGCTCGACCTTTTCGACAGGAATCACATTGCTACAAAAACCCTGGTGACCATTATGAAGAAATACATGTCCCGGGATGTAGCCTTAAACTATACAGCTGTAAAACCGGTGAAGGACAAACTGGTCTTGAAAGGAACGACTTTCTGCAAATGTGTCATAAatgtCCTTTTAAAGAACCACGTTGATAAGGTAACTGGGAACAAGGCCACCGAGCAAACCCTGTTATCAGCTCTAGGATCTGTTCTTGCTAATGCCAAGGACTGGGAAGGCTACAGAGCCCGAAGATTTAAATCTTCTATGCAGAGAGATGACAACGAGTCttcgaattaa
Protein Sequence
MPRAHQGNQYDTAETLGMKDDIIQGEPDVGPYSCNTAHIYAGNSSGAKTLTCEIEYSNDESLDIKQEVIQDQESLTCQKRDEEYESKLTITGIRVADILVFNKPPLQKKQTIQESRHKPEREYKCVKNGCHAKVYTPSFDSNFVIDQDLIHNHARDLNIARQAVNNNAKRKAVEEVFARPSKIIHSELETNIFSSGITSRDLGYIRKNIYGARRSVLQSLPKEQEEISEKITVSTRSDANASVVSTQKALGTSIQGRNKSSQDPDEVIPNCSLRPDLERHQRGECDHLSEGNQLDDKFVNTIISSGNNSSSKDLTCIIEHDNDETLKIKEEIFQDQEGHEKGEQIICSDRNQFEEKYITEVSFDNNSGNNILTTINYDNDESLDIKEEIIQDEWNSMSELKKSTGEPAGGSYSYKTADISSGNNSDAKTSACTIEYDNDESLDIKEELIQGKQSAEKCKTTKTSSDNNSCAKTLTYMVEYDTDETLEIKEEIIQGKQSDEKCRTTKTSFDNNFVPKTLTYMVEYDIDETLELEEEIIQDEQDSKSKLKKSSERLDESPYSCQTSHISSGNNSGAQTLTSKTGYNDESSGIQEEFIQDRVHQKDNSKTSQTKYTCEKCARNYSSLDSLKRHKRLEHSAVKPQFICDICGHKTSLKSDLSRHISSRHEGRVRQKPNSEKSILVHNCDKCSRSYRWLGSLTHHKRLEHAAVKPQFTCDICGHKTKLKDEQNSKSVLEQSTGAQDGGTYSYKTTRVLNRNNSGDNILTIVEYDHDESLDIKEELIHGRQSASSSTKNSETNSKKSTARPDDGQYYDLYSGHILELRTVFVKPKREEHSIICEGNVLKENYMATNISSNNSDGETSTCMIEYDHDTTLEIKEEKIQGQETFSGQKCDEKYETKLYTAYIREADIFGAKKKIPTCKKQKVQESKVVTNNTCEKCARSYKYKSHLNRHKKFECGVMPQFRYQPSPLTNTKRFYNDSKKSAERPAVEPYSAVHSGLFLGFETVFVNPEKEEHILICEGNPLDEKSMATEILSNNPDAETSTCMIEYDYDTTLEIKEEIIHDQETIDRQKCDEQYETKLYAAQMRGADICGANKKNYTCDKCARSYKNKRDLNRHKKFECGVKPQFKCNFCDRRFKRNLHLQQHIVRVHHKTNKKASQTKYNCDKCPRSYCSSDTLSFHIRLEHAAVKPQFICDICGYKTNLKPSLSRHISSKHLGQPWSKRNQPSASSNTKHFHSDSKKLTERPDSGPHFALHSGRETAVGHKFKKKCETKLHIAHLRKADICGAGKKLPPRKKQKVEELKLEKNYTCERCARSYKNKPHLNRHKKFECDQPSHSTNTKHFQSDSKKSTERPDGGPHSALHSDHFLEFETVFVKPDNNEHGLICEGNPLDEKSMATKISSNSPDAETSTCMIEYDYDTTLEIKEEIIHDQEAVSNQKCDEQYETKLYAGRMGEANICGAKKKLSNRKKQKVQELKVESNYTCDKCARSYKNKRHLYRHTKFECGVIRQFRCDFCDKRFKRNPHLQKHIIRVHHKTNIKASQSKYNCNKCPRSYSSSDALTFHIRLEHTAIKPEFICDICDYKTKLKPSLKRHISTKHLGCTQSKRNEETDTGQQRKEKYETILSIADIRDTNIFDVKNRLQTHNKKEQIQESKPGKIYTCEKCGRSYNREANLTRHQKLECDVIPQFRYRQSASTTNLKSDANKLTERTDRGPFSALHPGHFLEFETVFWTPESDEPNLLCVGNQSDEKYITGDIKEELIQDQETDLKVANIFAAQNRLMPRNRNQVIVESKPENRFACEKCGRSYTQEGNLGRHLKFECGVIPQFRYRQSHILNFETGFWAPESEEPNLLFEIKQLNEKCITTEISSGNYSESNTFSCMMEYENDKTLEIKEEIIQDQKTVRCQRADEKYHTKLCIADRSETHIFAVKNKRQPHQHSASRYTKNFKSDLKKSTEIPGCEPYSALHSGHLLEFETVFWTHENEEHNLHSVKNQLNEEYTTTASGINSKAMTSAYMIEYGNDEASDITEEIIQDKPNASTSTRNFKSDLRKSIGRRSGGPYTALHCVDFLEFESVFWKQEREQLVPLSARKQLTKNCITAEIFPGNNSDANTSNCRIEYENDKTLEIKEGNIQDQEIVSSQKCVERSKNRLSNAHIRETNVCGAKKKLPTRIKQKVQESRLEKNHTCEKCARSYKRQSDLNSHRKFECNVVPRFRFQPSASSYTKNFKIGLKKSKERPSCGSYTTLHCGDLEFQTVFSIEYGNDNAMEIKEEIIQEKKKKSTSNVLADFQFVDFSVSELPTILARELDLEDDQPDSQSKRPKIGEEDGSRYSSGFKQFVVKELMKITAQLENIQQSQQQLVSKIEVVEIEPKEANAMDKFMEEYSLNLPFKSVTEFEHFDLTLRSNPIARNKFMNSLLDLFDRNHIATKTLVTIMKKYMSRDVALNYTAVKPVKDKLVLKGTTFCKCVINVLLKNHVDKVTGNKATEQTLLSALGSVLANAKDWEGYRARRFKSSMQRDDNESSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-