Aque003453.1
Basic Information
- Gene Symbol
- -
- Assembly
- GCA_032357855.1
- Location
- JAUELO010000022.1:15571-17145[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00082 0.4 13.5 0.8 1 23 54 76 54 76 0.97 2 14 0.012 5.9 9.9 3.5 1 23 107 130 107 130 0.95 3 14 6.8 3.4e+03 1.2 2.7 1 19 138 156 138 160 0.92 4 14 0.0024 1.2 12.1 0.3 1 23 180 202 180 202 0.98 5 14 6.3 3.1e+03 1.3 2.5 2 14 212 224 211 234 0.77 6 14 0.0055 2.7 10.9 6.3 2 23 243 264 242 264 0.97 7 14 0.0028 1.4 11.8 3.1 1 23 273 296 273 296 0.98 8 14 0.026 13 8.8 2.0 1 23 310 333 310 333 0.94 9 14 4.3e-06 0.0021 20.7 1.9 1 23 339 362 339 362 0.95 10 14 0.00048 0.24 14.3 0.9 3 23 369 390 367 390 0.94 11 14 7.2e-05 0.036 16.9 0.6 1 23 395 418 395 418 0.97 12 14 2.3e-08 1.1e-05 27.8 0.7 2 23 425 446 425 446 0.97 13 14 4.5e-07 0.00022 23.8 1.0 1 23 452 474 452 474 0.98 14 14 2.8e-07 0.00014 24.4 0.1 1 23 480 502 480 502 0.98
Sequence Information
- Coding Sequence
- ATGCGACTCTGTCAATTTGTGGATTCCGAGGGAAAATCTCGTTATGCCTTGTTACCAGTGACACAAACTGAAATCTCCACGACTGAGAAATCCGAGATAATGTCAGGTGGTAAAATAAAGCTTGAAGGTGGTGATGATAATGTcacattgtttgaaatttttacttgtaACAACTGCAACGTGAACTTTCCCACTGAAAAGTTGTTGCTTAAACACAATTTAAGCCATGTTGCTTCTCATGAACGAAAAAGGAATACGAAATTGAGGAGATCAGAAGTCACATCAGATCAAAGAGAAACTGAAAGAATTTCACCAGCATTTTTCTGCAACTTCTGCGACTACCAATGTGATGATAAAGAAACTCTTTTCTCACATTTGCAGAATGAACATTAcacaaaatcttcgaaaaaattctcTTGTAGATTGTGTAACTTTACTTGTCTGAAACAGAAGAGTTTGGAGGCACATGCTTGGAAACATACATTGAAAGAGAAGGTTTTATCTGGTGAAGAAGAAGAGGTGGagcaaaaatttttctacagATGCAGCGAATGCGATTATGAGACTCTCAGCAGAGACGATCTTCAAGTACATTTGATCCGTCACGAAGAGGAGAAGAGCGAGCAAGTATTATCCTGTTCTCAGTGTGATTTTCAGTGTAAAAGAAAAAGCATCATGTCTGGTCATGTCTACAGGAAACACCAACCGAAACCTAACTGCTCTCAACGTTGCAATCTCTGCGATTTTTCTTGCGAAAGAAGAAGCACTCTTCATGTCCATCGACGTTATCATCGAATCAGGGATGTGAGTGATGACTACACTTGTGACGTGTGTggcttcaaaacaaaaaaaaagacttcgaTGTATTCTCACATCAAGAGGAAACACAGGAGTACTACTTCGGAGAGCCAGGATCAACTGGAGTTATTCTTTTGCAGCCAGTGTGACTATAAGAACAAGAACAAGTACGAATTGAAGGTCCATGTGGCCAGGAAGCACactgatgattttaaattctccTGCGAAACCTGCGGCAAGAAGTTCAAGGTCAAGGGTGATTTGACGAACCATACGCGTTTTACGCACCGAGAACAACCGGTGATTTGCGACGTTTGTGGGAAGACTTGCATGAACAGCAATTCTCTCTACGTCCATCAGAAGTTTGCTCATTACAAAGCTAAGTACGAGTGTCAGATATGCAAGAGACGAATGGTCACTCAGGAGAATCTGAATGAACATATGCTGAGACAACATGAGAAACGGGAGAGTGCTGTTTGTGAGGAATGTGGGAAAACGTTTTCGAGGAATAGCCGATTGAAGATTCACATGAGGATCCATACGGGAGATAAACCTTATTCTTGCACGATTTGCAAAAAGTCCTTTGCTCGTCGAACAGCGCTCAAACAACATCTACTCATTCATACTGGAGTCAGGCCTTACGTTTGTGATATTTGTGGAAAAGCTTTCACTCAGAAACCGGGACTTATTAGCCATCGGAAATCTCATCCCGGTTCTCACCCGCCTTTGCCGAGAGTTTTGATTGACCATATTCTGAATGACGTCATGAACAGCTAA
- Protein Sequence
- MRLCQFVDSEGKSRYALLPVTQTEISTTEKSEIMSGGKIKLEGGDDNVTLFEIFTCNNCNVNFPTEKLLLKHNLSHVASHERKRNTKLRRSEVTSDQRETERISPAFFCNFCDYQCDDKETLFSHLQNEHYTKSSKKFSCRLCNFTCLKQKSLEAHAWKHTLKEKVLSGEEEEVEQKFFYRCSECDYETLSRDDLQVHLIRHEEEKSEQVLSCSQCDFQCKRKSIMSGHVYRKHQPKPNCSQRCNLCDFSCERRSTLHVHRRYHRIRDVSDDYTCDVCGFKTKKKTSMYSHIKRKHRSTTSESQDQLELFFCSQCDYKNKNKYELKVHVARKHTDDFKFSCETCGKKFKVKGDLTNHTRFTHREQPVICDVCGKTCMNSNSLYVHQKFAHYKAKYECQICKRRMVTQENLNEHMLRQHEKRESAVCEECGKTFSRNSRLKIHMRIHTGDKPYSCTICKKSFARRTALKQHLLIHTGVRPYVCDICGKAFTQKPGLISHRKSHPGSHPPLPRVLIDHILNDVMNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00980387;
- 90% Identity
- iTF_00011393; iTF_00089828;
- 80% Identity
- -