Aque003451.1
Basic Information
- Gene Symbol
- ECU03_0790
- Assembly
- GCA_032357855.1
- Location
- JAUELO010000022.1:2-7325[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0012 0.61 13.0 0.4 2 23 55 77 54 77 0.95 2 16 0.0011 0.55 13.1 1.6 1 23 81 103 81 103 0.99 3 16 0.001 0.5 13.3 3.2 1 23 109 132 109 132 0.96 4 16 0.00065 0.32 13.8 0.9 1 23 139 162 139 162 0.94 5 16 0.00042 0.21 14.5 4.3 1 23 196 218 196 218 0.98 6 16 0.00093 0.46 13.4 0.1 1 23 222 244 222 244 0.98 7 16 0.13 67 6.6 0.2 2 14 249 261 248 262 0.90 8 16 4.6e-05 0.023 17.5 2.8 1 23 514 536 514 536 0.97 9 16 1.1e-05 0.0057 19.4 1.5 1 23 542 564 542 564 0.97 10 16 0.064 32 7.6 2.0 1 23 571 594 571 594 0.94 11 16 1.4e-06 0.00067 22.3 3.1 1 23 600 622 600 622 0.97 12 16 0.69 3.4e+02 4.3 3.9 2 20 628 646 627 650 0.82 13 16 2.9e-06 0.0014 21.3 1.0 1 23 657 679 657 679 0.96 14 16 8.3e-07 0.00041 23.0 1.2 1 23 683 705 683 705 0.99 15 16 0.024 12 8.9 1.1 1 23 711 733 711 733 0.94 16 16 6.7e-06 0.0033 20.1 0.6 1 23 739 761 739 761 0.98
Sequence Information
- Coding Sequence
- AAGACAGTCCCAGTGATATCGTTGTACAGAAAACCCTTTAACACCCCGAATTCCGAGGGCAAGATGGACGTAAAACACGAGTCTGAACTCGAAACAGAAGTGAAAGAAGCCTCTGCAATTATTGAACCCGATGTGGACCAAGTTCTCCACACACTTCGGGACACTTGTCCATTCTGCGAGAAGCGTTTCAAGGATGAGAAAAGAGTCGAGAAGCATGTGAGAGCAGTTCACAAAAGACCTTACAGGTGTGACATGTGCAGAAGGTCCTACTTCACCGCACGAGTCCTTGAAGAACATCGAAAAACCCACAGTAGTGACTTCTTCTTCGAATGTTCCATTTGCCATCTGAAGTACAAACGAGAGGAAGGACTGAAGCAGCATCACATCCGGGTTCATAGCACCGTGGATCCTAAATTTATGTGCGACCATTGTGGCAAGAGATACAAACTCAAGCTCGATCTTTTGCTTCACATTGGAAGGGCGCACATGTGCAACATCCAGATTTGTCGTTTTTGCGGAAAAGCAGTCAAGGACGTCAAGGGTCATGAGTGGAGACACCAGAAGCGAAACCGGAAGTCCATGGACTTTCCTTGTCATCTCTGCTTCAAGAAATTTCGCAGCAAGACAAAACTTGATAATCATCTGCTGATGCATAAAGAACGCTACACGTGTCAGGAATGTGGCCTTGAACTCCCAGGACCAAGTCAATTAATGAACCACAAATTGAAGCACAAACCGGGAATGACCTGCACGGTTTGTGAGAAGGTCTTCATATCGAGAAGCACAGGAAGAATCATCCTGGTCCTCTTCCTCCTCTGGTCACACCTACACCAATCGCTGATCTTGCCAGAAATGTTTTGCAAAAACTATAGCCGTCGGTTGAGACTTACACATCCTGAAGAATCAGCACTGACgGATCAGCCATCTAGCCTGATCAAGATAGAGTATCACATTGAGGATTTGTATGTCGACGAAAGAAGTGAAATTGCTGAAGATGATGAAGCTCCAATCAAAATTGTCTTCAATACATTGAAAGAAGAATACCCTCAGCCTGGGCTCAAAATACATCGACTTGAAGATCTCAAACTCCAAAAAAACTTCGACTTCTATGAAGAAGCATACAGATGGCAGAAAAAGAAATGCAATGGTGATCAGTACCTTTCTTCTAAATTCGAAACCGAAAAGACTACTCCACTTTTTCTACAGTCgtgcAATCCGCTAGACTCACTCGGTTCACCTTTTCTGACAGTCAGACTAGGAGAAGATTACTTTAGGATACCAAAGTCCTTAAAAGCATTCATGACGAAGGAACCCGGACCGGGGGAATCTGAAAAATCGCAAGAGAAAGAGAACCAGGACAAAAACGAGAACCTACCAGATCTGGAAAGTGACATCGAGAATCGGAAGTCATCAgaaactgacaataaaaaatcGCCAGACAAAGAAGATTTGGACGACACTCCTTTGGATAGAAGAAGAGTCAGAAAATGTAGATCGACAATCAAGAAGAAGAGCAAGAGTACCAGGAGAAAAATATTTCACACCTGTGAGATTTGTTCTCTCTCTTTTGATCGAAAAAGCAAGCTAGTTAGTCACATGTACAAACACAGCAATTCCAGACCCCATAAGTGTACCATttgtttaaaaggttttaagaccAGTTCTTATTTAGCCAGACACGTGGAGATTCACGATGAACCAGTTCATTTACATGCTTGCAGTCTCTGTGATTTCAAGGCCAAGACGAAaccctatttgaaaattcactacaTTAGGAAACATACTCAAGACTACAATTTCAGCTGTGATCATTGTGGTAAAATGTTCAAAGTACAATCGGATTACACGACCCATATGAAGGATCACGATACTGAATCTTGTGTCTGCGATATTTGCGGAAGTTCCTATCCTAGTAAAAGTTCTCTATATTTTCACAAGCATTACAAGCACAAGACGAAGGTTAAGGAATTCGAGTGTGAAATTTGTAGAAAGAGATTCAAGAgccaaaataatttgaataatcatGTCGAACTTCACAAGATGAAGTACGTCTGTGAACAGTGTGGAATGGAGTTCAAATTCAAGTATGGATTGACGAAACATCTTAGAACTCACTCTGGAGAGAAGTCATATTTATGTGCGATTTGTGGCAAGACTTTTGGATGTTTGAGTtcacagaaaattcatttgttaacgCACGTGGGCGAGAGACCTTATATTTGCGATATTTGTGGTCAGAGCTTCACTCAAAGGTCGCCGATGATGTTGCATAGGAGAAAACATCCTGGTACACATCCAGCTCCACCACctattaaaattactaatttacttCATGGCGTCCAAGATAagattattgttaacaaaattgggAAATGA
- Protein Sequence
- KTVPVISLYRKPFNTPNSEGKMDVKHESELETEVKEASAIIEPDVDQVLHTLRDTCPFCEKRFKDEKRVEKHVRAVHKRPYRCDMCRRSYFTARVLEEHRKTHSSDFFFECSICHLKYKREEGLKQHHIRVHSTVDPKFMCDHCGKRYKLKLDLLLHIGRAHMCNIQICRFCGKAVKDVKGHEWRHQKRNRKSMDFPCHLCFKKFRSKTKLDNHLLMHKERYTCQECGLELPGPSQLMNHKLKHKPGMTCTVCEKVFISRSTGRIILVLFLLWSHLHQSLILPEMFCKNYSRRLRLTHPEESALTDQPSSLIKIEYHIEDLYVDERSEIAEDDEAPIKIVFNTLKEEYPQPGLKIHRLEDLKLQKNFDFYEEAYRWQKKKCNGDQYLSSKFETEKTTPLFLQSCNPLDSLGSPFLTVRLGEDYFRIPKSLKAFMTKEPGPGESEKSQEKENQDKNENLPDLESDIENRKSSETDNKKSPDKEDLDDTPLDRRRVRKCRSTIKKKSKSTRRKIFHTCEICSLSFDRKSKLVSHMYKHSNSRPHKCTICLKGFKTSSYLARHVEIHDEPVHLHACSLCDFKAKTKPYLKIHYIRKHTQDYNFSCDHCGKMFKVQSDYTTHMKDHDTESCVCDICGSSYPSKSSLYFHKHYKHKTKVKEFECEICRKRFKSQNNLNNHVELHKMKYVCEQCGMEFKFKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYICDICGQSFTQRSPMMLHRRKHPGTHPAPPPIKITNLLHGVQDKIIVNKIGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -