Aque009502.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Amphibolips quercusostensackenii
Gene Symbol
pol
Assembly
GCA_032357855.1
Location
JAUELO010000127.1:4929608-4968835[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 5.2e-05 0.026 17.3 1.9 1 23 189 211 189 211 0.98
2 11 7.2e-06 0.0036 20.0 0.2 2 23 219 240 218 240 0.97
3 11 0.00071 0.35 13.7 0.9 5 23 249 267 247 267 0.97
4 11 0.00029 0.14 15.0 4.0 1 23 274 296 274 296 0.98
5 11 6.8e-06 0.0034 20.1 0.1 1 23 302 324 302 324 0.96
6 11 1.1e-06 0.00057 22.5 0.2 1 23 330 352 330 352 0.99
7 11 1.2e-06 0.0006 22.4 3.1 1 23 358 381 358 381 0.96
8 11 3.3e-06 0.0016 21.1 0.5 1 23 387 410 387 410 0.96
9 11 5e-06 0.0025 20.5 2.8 1 23 416 438 416 438 0.99
10 11 0.0001 0.05 16.4 0.4 1 23 444 466 444 466 0.94
11 11 0.00061 0.3 13.9 0.1 1 22 472 493 472 493 0.97

Sequence Information

Coding Sequence
ATGGTGAAGGTTTTTTCGAGTTGTGAAGTTCAGCTTAATGCCTGGTCTAGTTTTGGGAAGTCGAAGATTGCTGAGACATTATCAGACGAAGGTTTGTTGCCCTGTTTGAAAACGGTGCTCGAGGTATTGTTCTTCGCTGTGAACAGCGACAAGAAGATCCTCGTTATACAGGTAACCGAAGGGAAGATCGCGGGTTGCTTCATAAATAGAACGCTGGAAAGTTTTTGCCGCATTTTGAAGTCTGAACGTCATGGACGGAAATACGGAAAGTCAAAGGGGCGTGATGATGTCAGTCTTGGCGATGCTCTAAGGGTTGATTGGAATCTCGTTCAATGCTCTGACAAGGTCCACGAAAGAGCTTATATTCACTTGACTTCGAATCTTCTTCGTTCCAAAGTGCCCTCACGGGCGATTCTTGAGTGCCTAGATGATTGCCACACTGGTCCTAAAGATAAAACAAGAACTCACGAATTGAAAATTACCACTGGTAGTAAAAAACTGTTCAGAAAAAGAACTGATCTTTCCGTTCATCTTGATGATCACGTTGCAAAAGAGGAAGGAGACTTTCAGTGTGAGAACTGTAACAGAATATTTACTAATTTGCGACTTTTTAGAATTCACAAGCGCATTCATTATCCTCAGACTAAATCCTGGCCATGTGAAATATGTGGCAAACGATACAGTTCTAGAAATTTGCTGGAGGAACACACTAATACCCATACTGGAAATCGACCTTATATGTGTAAATGTGGAAAAGATTTTGCTTCAAAGTACACATACAAGGCACACGTCAAAACACATGAATATCGGCCACGACCTTTTGAATGTTCGcattgtagtaaaacttttttgagtCAGCAAAACCTTAGTCAGCATGAGAGAACTCATAATGGGGTCAAGGAATATGTGTGCGATCAATGTGGTAAAGCTTTTGGATCACCACATAATCTAGAGGTTCATAGCATAGTGCATACTGGTCACAAACCCTATCGTTGCAGTGAATGTGGCAAAGCATTCGCCAGAAAAGCTGAGATTAGAGATCACGAAAGAACTCACACGGGTGAAAAACCGTACCAATGTGAACATTGTGGTTCTACTTTCAGtcaaaggTCGAATCTACAGTCTCACAAACGAGCAACTCACTACAATGATAAGAGATATAAATGCGATGATTGTGGAAAAGGATTTAAGCGACGTAGACTTCTAGATTATCATATAAAAGCAGCTCATACTGGCGAACGTCCATACAAATGCGAGACTTGTACAGCAACATTCGTTTATCCTGAACACTTCAAGAAGCACATGCGCATTCATACAGGAGAAAAACCATTCTTGTGCGAAGTGTGCGGTAAAGCATTTAACAGCCGAGATAACAGAAATGCGCATCGCTTTATACACAGTGATAAGAAACCATATGAGTGTTTAGTTTGTGGCACAGGTTTTATGAGGAAACCACTTTTATATACGCATATGCAAACGCAGATGCAATTGGGGACGAAGGAGCATGCAAAGGCGCACCTGGCCCGTGGTAGGGCCAGGTTTGCTGTACGGGAGGACGCGGTGCAACCAGTATCTCCTAAAGACTTGGAAGCTGAAATCGCGGAATTAGACCATATGTTAGCAGATGATATTATGGAACCCTCGAAAAGCGATAAGTCGTCTCCTGTTTTTATGATTAGAAAGCCCGATAAGAGTTATCGATTTTGCTTAGATTTTAGAAAGCTAAATGACGTCACTAAAAAGGATGCGAACCTCCTTTCACAGATAAACGGAATATTAGACAAGTTGCGCAAAGCTAGGTATATCTCCAGAATAGATTTACTTAAGGGCTTTCTTCAGATTTCGCTGCAGTCAGAAAGTCGAGAAAAGACCGCATTTACAGTACCTGGTCCTggacattttcacttaaaaagaatGCCCTTCGGTCGCACAAATTCCCCCGCAACTTTCCAGAGACCGCTAGATCGTCTGATTGGCCCTTCAATGGAACCCCATTGCTTTGCCTATCTGGACGATATAATAATCGCGTCGGAAACTTATGAGAAGCATTTGGAGTGTCTGGCTAAAGTACTAGGACCAATAGGTTTGGTACTCGCTGAAAAATTAGGACTGAAAATAAATCAGAGTAATGGTTTAGTGCAAGTTGCGAACAGAAGTTTGGAAGCAGTTTCTCAAGAAGTTATGGGACACCTGAACGACACGATAGTAGTAAACCAACCAAGATTGACAACAGAAGATGATCAAGTTATCACTGTCGCGGAAGGCAATGTGGAGCTTTTGATGGAAAACGCTGAAGTTGCACAGttggaagAAACAGAATTATACGTAGCAGGGCTAAAGAATCACGTTATTATACATCAGGATGGCAATCAGATATACCATGAAGGAAATGTTTTGAGTATTCCTACCGATGCTAGTGAACAAGTTCAGCATCTAGTTGTAGATGGACAGCTTTTAGGTGATGAAGAGGAGGAATCTAAGGAGGGCACAGAAGAAGCCACAGAATTGTACAGTTACGAAAATGGGGAAGATGAAGAAACTCTGGTACTACCAGGAACTTCTGGATACAAAGAAATCACAGGAGATGCTAAAAATGCAGTTAGATTAGTACAAATAAGAATTCCTTCTTCTTCTGCTGGAGATGGGAGGAACTGGCTGAGTTTAGTACAAAGCACTTGA
Protein Sequence
MVKVFSSCEVQLNAWSSFGKSKIAETLSDEGLLPCLKTVLEVLFFAVNSDKKILVIQVTEGKIAGCFINRTLESFCRILKSERHGRKYGKSKGRDDVSLGDALRVDWNLVQCSDKVHERAYIHLTSNLLRSKVPSRAILECLDDCHTGPKDKTRTHELKITTGSKKLFRKRTDLSVHLDDHVAKEEGDFQCENCNRIFTNLRLFRIHKRIHYPQTKSWPCEICGKRYSSRNLLEEHTNTHTGNRPYMCKCGKDFASKYTYKAHVKTHEYRPRPFECSHCSKTFLSQQNLSQHERTHNGVKEYVCDQCGKAFGSPHNLEVHSIVHTGHKPYRCSECGKAFARKAEIRDHERTHTGEKPYQCEHCGSTFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCETCTATFVYPEHFKKHMRIHTGEKPFLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGTGFMRKPLLYTHMQTQMQLGTKEHAKAHLARGRARFAVREDAVQPVSPKDLEAEIAELDHMLADDIMEPSKSDKSSPVFMIRKPDKSYRFCLDFRKLNDVTKKDANLLSQINGILDKLRKARYISRIDLLKGFLQISLQSESREKTAFTVPGPGHFHLKRMPFGRTNSPATFQRPLDRLIGPSMEPHCFAYLDDIIIASETYEKHLECLAKVLGPIGLVLAEKLGLKINQSNGLVQVANRSLEAVSQEVMGHLNDTIVVNQPRLTTEDDQVITVAEGNVELLMENAEVAQLEETELYVAGLKNHVIIHQDGNQIYHEGNVLSIPTDASEQVQHLVVDGQLLGDEEEESKEGTEEATELYSYENGEDEETLVLPGTSGYKEITGDAKNAVRLVQIRIPSSSAGDGRNWLSLVQST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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