Aque003448.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Amphibolips quercusostensackenii
Gene Symbol
-
Assembly
GCA_032357855.1
Location
JAUELO010000021.1:1288310-1307666[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.0056 2.8 10.9 0.0 1 20 150 169 150 170 0.95
2 21 0.00097 0.48 13.3 0.5 2 23 269 290 268 290 0.96
3 21 4.5e-06 0.0022 20.6 2.7 1 23 294 316 294 316 0.98
4 21 8e-05 0.04 16.7 1.2 1 23 322 344 322 344 0.97
5 21 0.00019 0.092 15.6 2.6 2 23 351 372 350 372 0.96
6 21 0.33 1.6e+02 5.3 3.1 1 21 545 565 545 566 0.95
7 21 0.0081 4 10.4 0.3 1 23 574 596 574 596 0.98
8 21 0.017 8.3 9.4 0.9 1 23 611 633 611 633 0.97
9 21 0.00035 0.17 14.7 0.3 2 21 648 667 647 668 0.94
10 21 1.1e-06 0.00052 22.6 0.5 2 23 677 698 676 698 0.97
11 21 0.55 2.7e+02 4.6 0.9 2 23 703 724 702 724 0.84
12 21 3.3e-06 0.0016 21.1 0.3 2 23 731 752 730 752 0.96
13 21 0.00033 0.16 14.8 1.1 1 23 761 784 761 784 0.97
14 21 0.85 4.2e+02 4.0 5.2 1 23 795 817 795 817 0.98
15 21 3.7 1.8e+03 2.1 0.2 3 23 825 844 823 844 0.82
16 21 0.0067 3.3 10.7 5.5 1 23 850 873 850 873 0.95
17 21 1.9 9.5e+02 2.9 4.8 1 20 958 977 958 980 0.94
18 21 0.00011 0.052 16.3 0.8 3 23 991 1012 990 1012 0.95
19 21 9.3e-05 0.046 16.5 6.3 1 23 1018 1040 1018 1040 0.97
20 21 0.11 54 6.9 0.2 1 23 1044 1066 1044 1066 0.97
21 21 1.6e-05 0.0078 18.9 3.0 2 23 1073 1094 1072 1094 0.97

Sequence Information

Coding Sequence
ATGTCCGATTTGAATAGAAAAACTAGAGGTAAAAAAACTAGTAGAAATGTGCCTCAATTCAAGTGGGGTAAACCTGAAATGAAACTGAAACAGATGTCCGATTTGAATAGAAAAACAACTAGTGGTAAAAAACTAGTAGAAATGTGCATCAAGTCAAGTGAgAGGGAAAAAACGATACCAAGACTCGAACAAGTTCTGGACCTACAAAATTATATTGTCGTGAAAGCGCCGCCACCAGAAGTCGACGAAGaggaaattgatgaaaattttgaagaaattccagattatgaatttattgaaaaccaGAAAATTGAAGATCCTGAATATCTTGAAGGTGCTGAATATCTTGAAGAAGCTGAATATCTTGAAGATActgaaaatcatgaaattcaagatCCTGATAATACTCAAAACGCTGCATATACCAAAGATAATGTAAAATGTGAGTATGTTTGCGACTCCTGTGATGAGTCTTTCGGCACTAGCAATGCTCTCATCGTTCACAAAACAGAGCGATCAATTATTAAAACGCGTGCAGCTCTTCGAGGCAATACGAAACCAAAGCGTTCAAAAAAGACCTATAATGAGTGGTTTTTTGAACAAACATCGATAGCTGAACGAAAAAAAGCTTATAAACCTAaagttaaaccaaaatttaataaaattaaagccAAACCCTTGACAGAAGACGTCTCAATCGAATCCACCAAGAAACCTAAAGAAGAATCAGAGTACGAGAACCGAACTTCAAGATCCACCAAAAAGTCTAGGGAAAAACCGATGGAAGAAGAAAGCGGACCCGTCGAGTGCAaagtttgcttgaaaatctttaaaaaacaaaagtaccTGAATGTGCACAAAGCTATTCATAATTCGCCTTACATTTGCCATATTTGTGGAAGACGTACGACATCCTCCTACTACCTGAACATGCACATTAGAAGACACAACAAAGATTTTTCGTTTTTCTGCAAGGTTTGTCAGAAAGGGTTTTACCTAAAAGCCAATTTAAAACTACACATGACGGTGCATTCTGAGAATAAACCTTGTGTCTGTAAAGTGTGCAAGAAGCCTTTCGGAAACtcgctttatttgaaaaatcatatgaaGCTGCACGAGGAACCGTCTACGAGGAAGAAGTTCAAGGAAGGAACGAAGCGGAAGAGAGGACGTCCCATTGGAGAAAAGAACGAACGcagaggaaaatttaaaaagcagtcTTCTCAAACTGGGAATGGAGTACAGTCAAGTGTCAAGACTGAATTTATTAACATCGAAGGGTTAGAAACGCAAGTAGACAAAGTTGATAAAAggcacagaaaaattaaaaaccaagaaAGTGAAGAACTAAATAAGCGAAAGAGAGGACGTCCTCCTAAAAATCCTCCAATTACGAGTGACTGTATTGCCAAAAGAACGAGAGGTCGACCGCGTAAATCTTCCCCATGCCGCGAAGTGAAATTAAATCCGGCAGCAAAAATTGATAAGTCAAAAGCTGAGAAGACTCCAAAGATGGTGAAACCTTCGCGAAAATTTGAGGAAGGTGATTCAACTTCGGAGGATCCATCCGATGACAATGACAGTGATTTTCTACCTTCTCTTcccactgaaaaatcttttaaaaaaacgcaATATCGCTGTAGATTTTGCAATTTCAGAACCTACTATAAAAACAATTACCTTAATCATATGGAACGATATGATGAGACTCCTGGTAGTTTTGAATGTCACTTGTGTGATGAGAGTCTTCCTTTGAGAAGAGAATTAGATGCTCACTGGAGAAACCACATGCCTAGCTATTTTCCTGATGGTCCAGATAAGCCGGGGCTCTACGAGTGTGATCTGTGCGatgagaaatttttgaagaaattccagCTTGGTAGGCATAGACAGGCACACCGACTTAATATTGTTCCGGAACCGGTACCAAGAAAAATGAAACGCTGTAGAGTATGTGGCAAAAGGTTTTATTCTGAAGTTGCTTTGTTCAAACACATGGAACAAGCCACTGATGAACATGAACCTGTTGAGTGTGATGTTTGCAAGAAGGTTTTCAGGTCGAAGCGAAATCTCATAATGCATCTCAGAATTCACATCGGCCCACTTATTTGTCACATTTGCGGGTCGAGGAAGTACTCGGACGCTTCTATGAAGGTTCATATTCGAAGACATAATAAGGACTACTATATTTATTGCGATGTTTGCAACAAAGGATTTTACAACAAAAGCGAGCTGAGACTCCACATGATCAGTCACACCAATCGGGAAACGAATCGTCCCTTTGTCTGTCAAATTTGTGGACGTTCTTATCGATCCGGTTGTTATCTGAAGTTGCACGTAAAAATCGCACATGTAGAGGCTGAAGAATATAAACGTAAGCGCTACAAGTGCGACATCTGCGATTTTGAAACACATCTGCTCAAGTGCCTAAAAATTCATAAGCAAACGCATACTGGAGAGAATTTGATTGCTTGCGAATTGTGCAATAAGATGATCAACAGGAGGTACATGCCGATTCATATTCGCACTCACACTGGTGAAAAACCGTTCGATTGTTCGATATGTGGGAAAGGATTCAATTGCAAGAAGAATCTTGTCAGGCACCACTCAAGAAAGCATCAGGCGAAGGTGTCTGTCGAGGTGGCGGTGGATCCATCAGGAAACGAACTCAGAATGGAGACATATAAAATTGAGGGCGAAACGATTGAGGTCTTCCGTGAAACACACCACGAGCAGATTATAGAATACGCACTCGACGAAACTGGAGGGATCGAaacggaaataaaaataaagataccCTTAAATTCTGATAGCATTGATGATCTCTTGCAGTCGAATTCAACCGAAGATGATCAGGCCATCAGTAAAATATACGAGTGCGAATTCTGCGGAAGAAGAATGAAGAAAAAGACGTTATTCCTGAAGCACAAGCTGTGCCATGAAAAGAAACTTTCTGGAGATATTGCAAATTGTGACAAATGTGAAAAGGCTTTCACTGACGAGGAGAAATTACAAAAACATTATATCAAATCTCATCAGGATGAGAAGCCTCATCAGTGCAGCCTTTGCGGAAAGTGTTTCAAAACCGAAGAATTTTTGAGAACACACCTGAAACAGCACAACAAGCGATTCGTCTGCGATGTGTGCGGAATTTCCAAAGTTTCAGGTTACGATCTTCGGCTTCATAAAAAGAAACACAATCAGGAATTCGTGACATACTGTAATATTTGTCACAAAGGCTTTTATACTAATCAAACGCTGGAACGGCATCAACTAACGCACACCGGTGAAAAACCGTTTCCTTATGGCACCATGTGA
Protein Sequence
MSDLNRKTRGKKTSRNVPQFKWGKPEMKLKQMSDLNRKTTSGKKLVEMCIKSSEREKTIPRLEQVLDLQNYIVVKAPPPEVDEEEIDENFEEIPDYEFIENQKIEDPEYLEGAEYLEEAEYLEDTENHEIQDPDNTQNAAYTKDNVKCEYVCDSCDESFGTSNALIVHKTERSIIKTRAALRGNTKPKRSKKTYNEWFFEQTSIAERKKAYKPKVKPKFNKIKAKPLTEDVSIESTKKPKEESEYENRTSRSTKKSREKPMEEESGPVECKVCLKIFKKQKYLNVHKAIHNSPYICHICGRRTTSSYYLNMHIRRHNKDFSFFCKVCQKGFYLKANLKLHMTVHSENKPCVCKVCKKPFGNSLYLKNHMKLHEEPSTRKKFKEGTKRKRGRPIGEKNERRGKFKKQSSQTGNGVQSSVKTEFINIEGLETQVDKVDKRHRKIKNQESEELNKRKRGRPPKNPPITSDCIAKRTRGRPRKSSPCREVKLNPAAKIDKSKAEKTPKMVKPSRKFEEGDSTSEDPSDDNDSDFLPSLPTEKSFKKTQYRCRFCNFRTYYKNNYLNHMERYDETPGSFECHLCDESLPLRRELDAHWRNHMPSYFPDGPDKPGLYECDLCDEKFLKKFQLGRHRQAHRLNIVPEPVPRKMKRCRVCGKRFYSEVALFKHMEQATDEHEPVECDVCKKVFRSKRNLIMHLRIHIGPLICHICGSRKYSDASMKVHIRRHNKDYYIYCDVCNKGFYNKSELRLHMISHTNRETNRPFVCQICGRSYRSGCYLKLHVKIAHVEAEEYKRKRYKCDICDFETHLLKCLKIHKQTHTGENLIACELCNKMINRRYMPIHIRTHTGEKPFDCSICGKGFNCKKNLVRHHSRKHQAKVSVEVAVDPSGNELRMETYKIEGETIEVFRETHHEQIIEYALDETGGIETEIKIKIPLNSDSIDDLLQSNSTEDDQAISKIYECEFCGRRMKKKTLFLKHKLCHEKKLSGDIANCDKCEKAFTDEEKLQKHYIKSHQDEKPHQCSLCGKCFKTEEFLRTHLKQHNKRFVCDVCGISKVSGYDLRLHKKKHNQEFVTYCNICHKGFYTNQTLERHQLTHTGEKPFPYGTM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-