Basic Information

Insect: Amphibolips quercusostensackenii
Gene Symbol: rbm22
Assembly: GCA_032357855.1
Location: JAUELO010000023.1:446118-480005[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00012 0.061 16.1 6.3 1 23 462 484 462 484 0.98

2 17 0.0031 1.6 11.7 5.3 1 23 498 520 498 520 0.97

3 17 0.0013 0.65 12.9 1.4 1 23 526 548 526 548 0.97

4 17 0.00081 0.4 13.5 4.0 1 23 555 577 555 577 0.98

5 17 2.7e-07 0.00013 24.5 1.0 1 23 583 605 583 605 0.98

6 17 4.2e-05 0.021 17.6 1.9 1 23 611 633 611 633 0.98

7 17 7e-05 0.035 16.9 5.1 1 23 639 661 639 661 0.97

8 17 0.043 21 8.1 1.5 1 20 667 686 667 689 0.85

9 17 0.00014 0.067 16.0 4.7 1 23 696 718 696 718 0.98

10 17 5.6e-07 0.00028 23.5 0.7 1 23 724 746 724 746 0.99

11 17 0.0001 0.051 16.4 6.6 1 23 752 774 752 774 0.95

12 17 3.5e-06 0.0017 21.0 4.6 1 23 780 802 780 802 0.98

13 17 4.5e-05 0.022 17.5 5.7 1 23 981 1003 981 1003 0.96

14 17 5.6e-05 0.028 17.2 0.3 1 23 1010 1032 1010 1032 0.98

15 17 7.9e-06 0.0039 19.9 2.8 2 23 1039 1060 1039 1060 0.96

16 17 0.00062 0.31 13.9 0.9 1 23 1065 1087 1065 1087 0.99

17 17 0.077 38 7.3 4.7 1 21 1097 1117 1097 1119 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00012	0.061	16.1	6.3	1	23	462	484	462	484	0.98
2	17	0.0031	1.6	11.7	5.3	1	23	498	520	498	520	0.97
3	17	0.0013	0.65	12.9	1.4	1	23	526	548	526	548	0.97
4	17	0.00081	0.4	13.5	4.0	1	23	555	577	555	577	0.98
5	17	2.7e-07	0.00013	24.5	1.0	1	23	583	605	583	605	0.98
6	17	4.2e-05	0.021	17.6	1.9	1	23	611	633	611	633	0.98
7	17	7e-05	0.035	16.9	5.1	1	23	639	661	639	661	0.97
8	17	0.043	21	8.1	1.5	1	20	667	686	667	689	0.85
9	17	0.00014	0.067	16.0	4.7	1	23	696	718	696	718	0.98
10	17	5.6e-07	0.00028	23.5	0.7	1	23	724	746	724	746	0.99
11	17	0.0001	0.051	16.4	6.6	1	23	752	774	752	774	0.95
12	17	3.5e-06	0.0017	21.0	4.6	1	23	780	802	780	802	0.98
13	17	4.5e-05	0.022	17.5	5.7	1	23	981	1003	981	1003	0.96
14	17	5.6e-05	0.028	17.2	0.3	1	23	1010	1032	1010	1032	0.98
15	17	7.9e-06	0.0039	19.9	2.8	2	23	1039	1060	1039	1060	0.96
16	17	0.00062	0.31	13.9	0.9	1	23	1065	1087	1065	1087	0.99
17	17	0.077	38	7.3	4.7	1	21	1097	1117	1097	1119	0.93

Sequence Information

Coding Sequence: ATGCTCAACCTTACTGGACACACTGGGGTACAGGTTGCCCCAGCCGATTTGAGACAAGCACTGAGAACGTACTGGCGTTCTAAACGTGACGCCAACAGCTTATTCCGTTGGTGTCCTGGTGCGAGAATGCGTTTCAAAAAAACCGAGGTCTGCCAGACTTGTAGTCGATTAAAAAACGTTTGCCAGACTTGTCTCCTCGACCTGGAATACGGCCTCCCAATTCAAGTCCGAGATGCAGCACTAAAGATCAAGGACGACCTGCCCCGTTCCGACGTCAACAAGGAATACTACGTCCAGAATATCGACAACGAGATCGGCAAGCTAGATCACACCACGCCAGCTGGTTCCGTTGGAAAATCTGCAGCCGCCAGCGACCTTCTGATGAAACTCGCGAGGACGAGTCCTTACTACAAACGGAATCGACCCCACATTTGTTCTTTCTGGGTGAAGGGCGAGTGCAAAAGAGGAGAAGAATGTCCCTATCGTCACGAAAAGCCAACAGATCCGGACGATCCTTTGGCTGATCAGAATATCAAGGATCGCTACTACGGTGTTAATGATCCAGTCGCGGATAAATTGNNNNNNNNNNNNNNNNNGATGCCGAAGTTGGACGCACCGGAAGATAAGCGCATCACTACACTTTATATCGGAAACTTGGGCGAAGTTTTGACCGAGAAGCAACTTCGGGATCACTTTTATCAATACGGAGAGATTCGATCCGTAACAATGGTGCCGAGACAGCAGTGTGCTTTTATTCAATACACACAGAGGAGTGCTGCAGAGGCTGCAGCAGAAAGGACATTTAATAAGCTGATTCTAGGAGGCAGACGACTGACGATTAAATGGGGAAGGTCTCAGGGTCGGCAGACGATATCAGCTGCAGAAGGAAATCGAGAATTGCTCGAACCTGTCCCAGGATTGCCGGGTGCTTTGCCACCTCCTCCAGAAGCTATGGGAAATAACTTCTTTAACTTGCAGCCTACGCCGGGAATTATGCCGCCGATGATGATTCCACCGCCTCCAGTTGCACCGCCTTTTATGTTCCCTCCGCAAATGGCAGCTGCGGCGGCAGCTGCTGTAGCGGCAGCAGCAGCAGCATTCCACAATTATGGCGAAGACAATCTACAATACAGATGCGTCGAAAAAAAGGAAATCGCAGAGAAGAAGTGCGTTAAGAAAAGTATTTCACCAAAAGAGGAAGAACACTCATGGAACAGTGTCTTCATCAAATCTGAGCCGCTCGAATACGATTCAGATGAAGAAAAAAGGAACTTGAATGGAGAAAATATGCAGTTAGACAATCTCTCTAACAAAGCCGACAATAATTCGATCAAAATTCAAGCACACACTTCTAAATTACCtacaaaaagtattcaaaaactcCACTATTGTCATCAATGTCAACGAGAGTATAAAACCGCACGAAGCCTGAAAAGGCACATTAATACTCATGCTCCCGTGAAAGGCCCTAAAGCTCAGCCAAAGAAGAAACATGTATGTCAAATATGCAACAAAGGTTGTGCATCACCAAGCAAACTTCAGTCGCACTTTCACACGCACTTAGAAGTTAAGCCTTTTGAGTGTGACATTTGTAATAACAAATTCAGAAGCTACTATACCATGAAATACCATATAATGGCTCATATGCAAATTGGCAAACGTCACAAGTGTCCAGTTTGTGCAAAAAGTTATGTGAGATTCAGCCGTTTAAGAGACCACATGCATTCCCACTTGAAAGTGAAACCTTTTGAATGTGAAGTGTGCAAGAAAAGTTATTCAAGAAAGAATGATTTAAAGGTTCACATGATTACTCACGAAGAGAAAAAAACTTTTCGGTGTGAAGTTTgctcaaaagattttacaagctTGTCTTATCTGAAAATGCATACAAAGCTTCACTCGGATAATTGTTCGCATGTGTGTACCGTTTGtggaaaaagatttcataagatgaGTTATCTTAAAATTCATATGAATCGTCACACGGGAGTAAAACCTTTCGAGTGCGATGTTTGCAAGAAGAAGTTCCCGAGCCGTGCTTCTATGAAATGTCACGTAGTTGCTCATATGGAAGAAGGAAAATCACATAAGTGTCCTGTATGTAAAAACTGTTTTCGAAAAGCATCGATGTTAAAGGAACATTTGCGACTTCACACGGGTGCTAAACCCTACGAATGCAAAGTTTGCGAGAAGAGTTTTATGAGAAAAGGTGGTTTAACGCAACACATGCTCACTCACGATAAAAAAAGGCCGTTCCTTTGTGACATTTGTCATAAAAGTTACAAAACGCATGGTCATCTCAAAATTCATCAAAAGATACATTTGAATGAAGATTCGTTTCCTTGCGACATTTGCCATAAAAGTTTTAAGAGGCTTGGCCATCTCACACTCCATAAAAGAATGCATTCGAAGGACAATGATTCTCGACGAGGGAAGGCAGTGAAAACAAGttcaatagataaaaatattattattgtgaaatctGAAATACAAGAAATTGAAGATATAGATTTGCGGGGTCAAGATATGAGTcctaaaaagatgattaaaaaagaaaagaatgtaGATCAGACTTCaataggaaaagaaagagaagaaacaGACAGTATTCTGAAGACTGAAGTTAAGAGGGAAATATGTGATGACGATACAGATTTGCAGTTCCAAGTGGACAAAGAATTCCAGCAAGGACCACGAGAGGGCCAAGACAAACCCAGGCGTAACACAACCTTTTACAGCATCGAGTTCGCATCTAGATTATTTtttgtATCAGTAGACATGGAAGCTGTCTTTATCAAATATGAGCCACCAGAATACGAATCAGTGGACGAGGAGAATCTGTTTAACAAAGAGAGCAATGATGTTCCAAAAAATGAAGCAGCTTATCCAGCACCAAGCAAGCTTGAGACCCACGTTAATTCACGTTCAAATATTGAGCCTTTCGAGTgtgatatttgtaaaaaaacattcaaaaatcggCACAATGTAAGAAAACATATACACGATCATATAGAAAGTGGAGGATCTCACAAGTGTCCAGTTTGTGCCGAAAGTTTCGAGGGTCCCTTCAGTTTAAGAATACACATGCGCCTTCATTTGGAAAATTACGACAACGAATGTGTAATTTGCCATAAGAGGTTTTCAACAACAAGTAATTTAGTGCGACATATGTTTAGCCACGGAGAAAAATCTTTTCAGTGTAACATTTGCTTCAAAGGTTTTTTGAAACCGGATGCTTTGACAACTCATAAAAGGAGCCACTTGGACGAAGAGGAGCGTAAACTTCTCTATAAGTGTAAATTGTGTGATAAGGGTTTCATTAAGAAATATAAGCGTGATCAACACATGCTTTGTCACAGTAGAGAAAAACCTGTCGAGTCACAAACGACTTCATCCGGGACAGAAACAGGAACAAAGTGA
Protein Sequence: MLNLTGHTGVQVAPADLRQALRTYWRSKRDANSLFRWCPGARMRFKKTEVCQTCSRLKNVCQTCLLDLEYGLPIQVRDAALKIKDDLPRSDVNKEYYVQNIDNEIGKLDHTTPAGSVGKSAAASDLLMKLARTSPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVADKLXXXXXXMPKLDAPEDKRITTLYIGNLGEVLTEKQLRDHFYQYGEIRSVTMVPRQQCAFIQYTQRSAAEAAAERTFNKLILGGRRLTIKWGRSQGRQTISAAEGNRELLEPVPGLPGALPPPPEAMGNNFFNLQPTPGIMPPMMIPPPPVAPPFMFPPQMAAAAAAAVAAAAAAFHNYGEDNLQYRCVEKKEIAEKKCVKKSISPKEEEHSWNSVFIKSEPLEYDSDEEKRNLNGENMQLDNLSNKADNNSIKIQAHTSKLPTKSIQKLHYCHQCQREYKTARSLKRHINTHAPVKGPKAQPKKKHVCQICNKGCASPSKLQSHFHTHLEVKPFECDICNNKFRSYYTMKYHIMAHMQIGKRHKCPVCAKSYVRFSRLRDHMHSHLKVKPFECEVCKKSYSRKNDLKVHMITHEEKKTFRCEVCSKDFTSLSYLKMHTKLHSDNCSHVCTVCGKRFHKMSYLKIHMNRHTGVKPFECDVCKKKFPSRASMKCHVVAHMEEGKSHKCPVCKNCFRKASMLKEHLRLHTGAKPYECKVCEKSFMRKGGLTQHMLTHDKKRPFLCDICHKSYKTHGHLKIHQKIHLNEDSFPCDICHKSFKRLGHLTLHKRMHSKDNDSRRGKAVKTSSIDKNIIIVKSEIQEIEDIDLRGQDMSPKKMIKKEKNVDQTSIGKEREETDSILKTEVKREICDDDTDLQFQVDKEFQQGPREGQDKPRRNTTFYSIEFASRLFFVSVDMEAVFIKYEPPEYESVDEENLFNKESNDVPKNEAAYPAPSKLETHVNSRSNIEPFECDICKKTFKNRHNVRKHIHDHIESGGSHKCPVCAESFEGPFSLRIHMRLHLENYDNECVICHKRFSTTSNLVRHMFSHGEKSFQCNICFKGFLKPDALTTHKRSHLDEEERKLLYKCKLCDKGFIKKYKRDQHMLCHSREKPVESQTTSSGTETGTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -