Basic Information

Insect: Amphibolips quercusostensackenii
Gene Symbol: -
Assembly: GCA_032357855.1
Location: JAUELO010000078.1:2016577-2018506[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.43 2.1e+02 5.0 0.3 2 23 125 146 124 146 0.95

2 15 0.025 12 8.9 0.3 2 23 151 172 150 172 0.97

3 15 0.0014 0.69 12.8 2.0 1 23 178 200 178 200 0.97

4 15 2.3e-06 0.0011 21.6 0.3 1 23 241 263 241 263 0.98

5 15 1.4e-05 0.0069 19.1 1.2 1 23 269 291 269 291 0.98

6 15 4.5e-06 0.0022 20.6 1.8 1 23 297 319 297 319 0.97

7 15 2.3e-06 0.0011 21.6 1.6 1 23 325 347 325 347 0.95

8 15 2.7e-05 0.013 18.2 0.6 1 23 353 375 353 375 0.98

9 15 1e-05 0.0051 19.5 5.0 1 23 381 403 381 403 0.97

10 15 1.6e-07 7.9e-05 25.2 0.8 1 23 408 430 408 430 0.97

11 15 0.00051 0.25 14.2 1.2 1 23 436 458 436 458 0.97

12 15 1.9e-06 0.00092 21.9 4.6 1 23 464 486 464 486 0.96

13 15 1.6e-06 0.00077 22.1 1.0 1 23 492 514 492 514 0.98

14 15 9.5e-07 0.00047 22.8 1.7 1 23 520 542 520 542 0.99

15 15 3e-05 0.015 18.1 1.4 3 23 550 571 549 571 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.43	2.1e+02	5.0	0.3	2	23	125	146	124	146	0.95
2	15	0.025	12	8.9	0.3	2	23	151	172	150	172	0.97
3	15	0.0014	0.69	12.8	2.0	1	23	178	200	178	200	0.97
4	15	2.3e-06	0.0011	21.6	0.3	1	23	241	263	241	263	0.98
5	15	1.4e-05	0.0069	19.1	1.2	1	23	269	291	269	291	0.98
6	15	4.5e-06	0.0022	20.6	1.8	1	23	297	319	297	319	0.97
7	15	2.3e-06	0.0011	21.6	1.6	1	23	325	347	325	347	0.95
8	15	2.7e-05	0.013	18.2	0.6	1	23	353	375	353	375	0.98
9	15	1e-05	0.0051	19.5	5.0	1	23	381	403	381	403	0.97
10	15	1.6e-07	7.9e-05	25.2	0.8	1	23	408	430	408	430	0.97
11	15	0.00051	0.25	14.2	1.2	1	23	436	458	436	458	0.97
12	15	1.9e-06	0.00092	21.9	4.6	1	23	464	486	464	486	0.96
13	15	1.6e-06	0.00077	22.1	1.0	1	23	492	514	492	514	0.98
14	15	9.5e-07	0.00047	22.8	1.7	1	23	520	542	520	542	0.99
15	15	3e-05	0.015	18.1	1.4	3	23	550	571	549	571	0.94

Sequence Information

Coding Sequence: ATGCGAGACAAATTCATGGACAAAATGgATGAAAATATTGTGAGTGTTTTGCTGAAGGAGGGCACTGGAAAATCTGATTCTGGCTTCATGGAGGACATTTGCTCGGCCAATTTTGAAAAGGCGCTATTATCGATCGGGAATCATGAAATGGACTTCTCTGATGAAATGGTTAAGTTGGAACTGGAAGGAGAGACGAGTACCCATCCAAATTGGGTGACTCAAATCTCAAACACGAATCTCTGCGATAAGGAAGATGGATCCCTCCAGAGATGTCTGATAAACGTAGGTTTTGGCTCCGTAATCCCAGAAGAGATCCTCGAAAAACCACAATTTCTCCAAGCCAGTCCCCAACAgcgaaaattctgcaaaatccaATGTGCCATCTGTAAAAAATGGTTTCTGAATAACGACTCCATGGTAACCCATCTAAAACTTCACTGCAGTGGAAATCGCTGCGAAGTCTGTGCAGAAAATTTCCTCGATACTTCGACTCTCTATACTCACATGCTAACTCACGTGGGGATGAATCTCTTCGAATGCAAcatctgtcaaaaaaaatttccctgcAAATTAGGTCTCCGCAATCATATGCAGGCTCATTTCgtcgaaaaagaatttgaaaacgaACTTGGGAAAAAATTCGATTCAGAAATACAGGAAGAAATCTACCAGGAGGAGTTGAATTCTACCCTGAGCCAAAATACCATCGAAGAAAGGCCTTTTTCCTGTGATCTTTGCGAGGCTTCCTTCAAAGAAAAGGGGAATTTAAATCGTCACATGCTGATCCACACTgaacaaaagatctacaaatgcgACGTTTGTTTCGCTTCTTTCAGACAAAAAGGGAAGCTAAATCTTCACATGACTTCTCACACTGGGagcaaacaatttaaatgtttgatgTGTCACAGATCTTTCGCCCAGAAGAATGCGTTGAATAATCACATGCTCGCTCACAGTGAAGAAAAACCTCATGCTTGTAATATTTGCGAGAAGACTTACAAAAGAAAATCCGAATTGATAAGGCACTCAATGGTTCATACAGGGGAGAGACCTTATGAATGCAAAGAATGTCTAATGACCTTCAGAGAAAAGGCGAAACTGAATTCTCACATGCTGGTACACACTGGTGAAAAACCTCACGAGTGTCAAATTTGCCACAAAGCTTGTGCGAGAAAATCTGATTTAAATAGCCATATGCTTTCTCACACTGGGGGACAGTATGATTGTACAATctgcgaaaaaatttttaccaggaAGTCGGATTTAAACAGACATACACTGATTCACACAGGAGAGAAACCTTTCGCTTGTGTACATTGCAATATGGCTTTTAGAGAAAGGACAAGACTGAATTCCCATATGCTTATTCACACTGGAGACAAGAGACACGCTTGTCATATTTGCCAAAAGTCGTTCAAGGAAAAGGCGATGCTGAAAAAGCACATGTTGACTCACATGGGTGATCGACCTTTCGAGTGCTACGTGTGCGAAAAAACTTTCACCCAGAAGACTACATTGAACAGTCATATTTTGATACATGAGGGCGAGTCTTCTTATGAATGTAGCACCTGTAATAAGATTTTTAGAGATAGATTTGCATTGAAAAAGCATTTGCTGACACATGCTGGGGATACATTTAATGACTGTCCGATTTGCTTGAAGAAATTCACGCACAGGTCGGCTTTGAACAATCATATTACTAATTTGCATAGTTCCTGA
Protein Sequence: MRDKFMDKMDENIVSVLLKEGTGKSDSGFMEDICSANFEKALLSIGNHEMDFSDEMVKLELEGETSTHPNWVTQISNTNLCDKEDGSLQRCLINVGFGSVIPEEILEKPQFLQASPQQRKFCKIQCAICKKWFLNNDSMVTHLKLHCSGNRCEVCAENFLDTSTLYTHMLTHVGMNLFECNICQKKFPCKLGLRNHMQAHFVEKEFENELGKKFDSEIQEEIYQEELNSTLSQNTIEERPFSCDLCEASFKEKGNLNRHMLIHTEQKIYKCDVCFASFRQKGKLNLHMTSHTGSKQFKCLMCHRSFAQKNALNNHMLAHSEEKPHACNICEKTYKRKSELIRHSMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECQICHKACARKSDLNSHMLSHTGGQYDCTICEKIFTRKSDLNRHTLIHTGEKPFACVHCNMAFRERTRLNSHMLIHTGDKRHACHICQKSFKEKAMLKKHMLTHMGDRPFECYVCEKTFTQKTTLNSHILIHEGESSYECSTCNKIFRDRFALKKHLLTHAGDTFNDCPICLKKFTHRSALNNHITNLHSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01389646;
90% Identity: iTF_00200978;
80% Identity: -