Aque017184.1
Basic Information
- Gene Symbol
- ECU06_1150
- Assembly
- GCA_032357855.1
- Location
- JAUELO010000232.1:2381800-2387880[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.8e-05 0.009 18.7 0.7 1 23 76 98 76 98 0.98 2 19 5.1e-07 0.00025 23.6 0.4 1 23 104 127 104 127 0.96 3 19 0.00076 0.38 13.6 0.5 1 23 133 155 133 155 0.96 4 19 1.8e-06 0.00089 21.9 1.2 1 23 161 183 161 183 0.96 5 19 5.8e-06 0.0029 20.3 1.1 3 23 191 211 191 211 0.99 6 19 0.0005 0.25 14.2 0.7 1 23 268 290 268 290 0.98 7 19 8.6e-05 0.043 16.6 1.2 3 23 298 319 296 319 0.97 8 19 9.9e-05 0.049 16.4 0.3 1 23 325 347 325 347 0.98 9 19 0.00021 0.11 15.4 4.0 1 23 353 375 353 375 0.99 10 19 0.0022 1.1 12.2 2.0 3 23 383 403 381 403 0.94 11 19 0.00028 0.14 15.0 1.6 1 21 409 429 409 431 0.93 12 19 4.5e-05 0.022 17.5 1.1 1 23 437 460 437 460 0.95 13 19 2.3e-05 0.011 18.4 0.8 2 23 558 579 557 579 0.97 14 19 0.00071 0.35 13.7 3.7 1 23 585 608 585 608 0.96 15 19 2.5e-05 0.012 18.3 0.3 1 23 614 636 614 636 0.97 16 19 7.8e-05 0.039 16.8 3.3 1 23 642 664 642 664 0.96 17 19 0.24 1.2e+02 5.8 3.3 1 23 670 692 670 692 0.94 18 19 1e-05 0.0051 19.5 1.0 1 23 698 720 698 720 0.97 19 19 7.2e-06 0.0036 20.0 3.9 1 23 726 749 726 749 0.98
Sequence Information
- Coding Sequence
- ATGTTTCTTAGAAGGCTAAGTCGAAAGTTTGTTTGCAGGTCGGAACTAAATCGAACCGAGAATGGATTTGTCTTTGTTGAATTGATAGAAGACCATGAAGAAACGAATAAAAAGCCGGTATCTAAATCTAAACGAAAGCGGATGCATTTACTACATGAGGATTTCAGCCTGAATCGACGTCTTGAACTTAATCAAGTCAAGACTGTCGTTGAGGGGATAACGTACTACAAGTGTCCTGATTGTCCCAAGAGTCTCAGAAGTATCTACAATTATTTCGTGCATCGAAGAGGTCATCTTGGCGAGCGACCTTTTACTTGTCACGAGTGTGGAAAAGGTTTCCCCTCCCTTTCCGGCCTCAATCGACACGTTCGGGATGTTCACGTAGGTTTGAAGAAACACAAGTGTGATATTTGCGGCAGACCTTTTGCCTCCAAAGTTGCCAAAGACGAACACAGACTGACACACACGGGGGAGAAACCTTATGTCTGTGAAATCTGCGGAAAGGCCTTCACCCAAAAAGCCTCTCTGCATGTGCACAAGCAATTCCACTCGAAGGATTTGTCCCATTGGTGCCCGATGTGTAGTCGAGGATTTAAAAGAAAGCAGGAGCTGAACAAGCACATTTTGACGCACACCGGGCAAAAACCAACGATACCTCAAAAATCATCTTCAGAACAGGCACAAGGATTGATGGTTGGATGTTTGTTTTCCAGGTGGGAGATTGTTGCTGAAGAAGAGAGATTTACTGGAGAGGAGGCGAAACTGGAAGAAGCGAAAACCATGTTTCAAGGTCGAGTTGCTTACGAGTGCCTTACCTGCAAGAAAatcattattaccaaaaaaggatACACCAGGCATATTCGGGTGCACTCAGCAAAGAAACCCTGTCTTTGTAAAATTTGCGGGAACAGCTACACAGTTCGGAAAGATTTAGTAAGACACATAAGAAGTGTGCATGAGGGTTTAAAATCTTATGTCTGTGATCTGTGTGGCAGAGCTTTTGCAAACAAATATTCCCGTGATGATCATCGACGTATTCATACTGGCGAAAAACCATACACTTGTCAGCACTGCCGAAAAGTATTCCGTACAGTCAACTTGCTTTATGTTCATAATCGAACTCATACGGATTATAAGCCGCATTTGTGCTCCTTTTGCGGAAAAGGTTTCCAGAGCAGGCAGGGTTTGAACAATCATACGACTATTCATACGGGGGTAAAGGATTTTGCTTGTGAAATGTGCGGAAGACAATTTGCGACGAGGACGGAACTTGTTCGGCATTATAATTGTCACAGTGAAGGTAAACCTTTCGCTTGTTCAAAGTGCGGTCTTCGTTTTGGGCAAAAACGTTACTTGAGGAATCATATTAATCTGTATCATAAAGTCGAGGCTGATGTTTTGTTGGCGGAGCTTCATCCGATTAAGGATTGTCAACCATCTTATTTCAACGAGTTTCTACAACGTTTAGAAACATTAGATAACTCAAAGAAGAGTTCTTCTGCACCAAAAACGTCTTCTTACGATTCTAGAgaagaatttttgactgaaaaattgatCAGAACCAGCGTGAATCCAGTAATCTCGAAGACTGAAAATGTGCCAGCAAAAATTTCGTCAAAACTTTCAAAGAAGCCtcgaaaaaaagctaaaaattgcaTTGTGGATCCGCTGGAATGTGATCAGTGTGGGAAAAAGTTTCGATTACAGGAAAGCTTTCGAACACACGCGCGAATCCACACTGGTGAAAAACCCTTCACTTGTCACGTTTGCGGAAAGCAATTTGGACAAACTGGAAGTCTTTATTATCATCTGAAGCACGTGCATGGAGGTGTAAAAAATCACTCGTGTGATATTTGTGGTCGAAGTTTTGCCATGAAAGCTGCTATGGAAGATCATCGAAGAATTCACACCGGTGAGCGACCCTACGTTTGTGACTCTTGCGGAAAAACCTTTAAAACCAAGGCTTCCCTCTATATTCACTGTAAAACCCACACGGACGATTATCCTCATCAGTGTAGCTTCTGCAAAAAAGGATTTCGCTGGAAACAACAAATGCTGGGTCATCTGACAACTCACACTGGTGTTAAAAATCACATCTGCGAGACTTGTGGTAAGGCGTTTGGGGTCAAAAATGACCTCACGCGACACAAGAGGATTCACTCGAAGGAAAAACCTTATTCTTGTCAACATTGTGGTCTCAGTTTTGCGCAAAAGAGGTATCTGAAAAGCCATGAGCGAACTAAACATAGCTGA
- Protein Sequence
- MFLRRLSRKFVCRSELNRTENGFVFVELIEDHEETNKKPVSKSKRKRMHLLHEDFSLNRRLELNQVKTVVEGITYYKCPDCPKSLRSIYNYFVHRRGHLGERPFTCHECGKGFPSLSGLNRHVRDVHVGLKKHKCDICGRPFASKVAKDEHRLTHTGEKPYVCEICGKAFTQKASLHVHKQFHSKDLSHWCPMCSRGFKRKQELNKHILTHTGQKPTIPQKSSSEQAQGLMVGCLFSRWEIVAEEERFTGEEAKLEEAKTMFQGRVAYECLTCKKIIITKKGYTRHIRVHSAKKPCLCKICGNSYTVRKDLVRHIRSVHEGLKSYVCDLCGRAFANKYSRDDHRRIHTGEKPYTCQHCRKVFRTVNLLYVHNRTHTDYKPHLCSFCGKGFQSRQGLNNHTTIHTGVKDFACEMCGRQFATRTELVRHYNCHSEGKPFACSKCGLRFGQKRYLRNHINLYHKVEADVLLAELHPIKDCQPSYFNEFLQRLETLDNSKKSSSAPKTSSYDSREEFLTEKLIRTSVNPVISKTENVPAKISSKLSKKPRKKAKNCIVDPLECDQCGKKFRLQESFRTHARIHTGEKPFTCHVCGKQFGQTGSLYYHLKHVHGGVKNHSCDICGRSFAMKAAMEDHRRIHTGERPYVCDSCGKTFKTKASLYIHCKTHTDDYPHQCSFCKKGFRWKQQMLGHLTTHTGVKNHICETCGKAFGVKNDLTRHKRIHSKEKPYSCQHCGLSFAQKRYLKSHERTKHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -