Aque003457.1
Basic Information
- Gene Symbol
- -
- Assembly
- GCA_032357855.1
- Location
- JAUELO010000022.1:37326-43053[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.022 11 9.0 0.2 2 23 10 32 9 32 0.95 2 19 0.0024 1.2 12.1 0.5 1 23 37 60 37 60 0.97 3 19 1.2e-05 0.006 19.3 0.5 3 23 68 89 66 89 0.93 4 19 3e-06 0.0015 21.2 2.7 1 23 95 117 95 117 0.98 5 19 1.6e-06 0.00078 22.1 0.6 1 23 123 145 123 145 0.98 6 19 4.4e-05 0.022 17.5 0.9 1 23 356 379 356 379 0.95 7 19 9.2e-05 0.046 16.5 3.4 1 23 385 408 385 408 0.96 8 19 7.1e-05 0.035 16.9 0.4 2 23 445 467 445 467 0.95 9 19 0.00049 0.24 14.2 2.2 1 23 473 496 473 496 0.98 10 19 0.00034 0.17 14.7 4.1 2 23 556 578 555 578 0.89 11 19 0.00026 0.13 15.1 1.0 1 23 622 645 622 645 0.94 12 19 2.1e-06 0.0011 21.7 0.4 1 23 651 674 651 674 0.98 13 19 0.016 8.1 9.4 1.1 1 23 687 710 687 710 0.92 14 19 3.1e-06 0.0015 21.2 1.1 1 23 716 739 716 739 0.96 15 19 0.00025 0.13 15.1 4.3 3 23 746 767 745 767 0.96 16 19 3.1e-05 0.015 18.0 4.2 1 23 772 794 772 794 0.98 17 19 0.0029 1.4 11.8 1.2 2 21 801 820 800 823 0.94 18 19 3.2e-05 0.016 18.0 0.5 1 23 829 851 829 851 0.97 19 19 8.3e-07 0.00041 23.0 1.4 1 23 857 880 857 880 0.97
Sequence Information
- Coding Sequence
- ATGAGGTTTCATCAAGAACCACCAGTAGTTTGTGATGCTTGCGGAAAGACTTACTTGAACAGTCGATATCTTTATTTACATCAAAGATATGCTCATTACAAAACTGCATTTCCCTGCCCTTTTTGCAAACGATTTATGGCTACTCAGGAGAATCTTGATCAACATATTAGACAGCAACATGGTCAGAAGGATCGAGTGATTTGTGATTCGTGTGGTAAAAGTTTTTCTACTACTGATACTCTTCGACGACACGTTAAATTTGTACATTGCAAAATTAGGTCATACTCGTGTGAGATTTGTAGTAAATCGTTTTCTCGAAGGTGTGAATTAAGGCAACATTTACTCATTCATACTGGAAAACGTCTATTCGTCTGTGACATTTGTGGTCAACAGTTTACTCAAAAATCTGGTCTAGTCAGTCACCGGAAACGCCATCCGGGTGAACATCCTCCATTACCAATGATAAGTGGAGATCCCCAGTTAGAAAGCGGAGATCCCCAGCTAGACAAGCGGAGGTCCCCGGTTTGTCAAGTTGAAATCCCCGGCTTGGCAAGCGGAGGTCTCAGGTTTGACAAGCTGAGATCCCCGGTTAGTCAAGCGCCAAGCAGTGATCTCCGGTTAGACAAGCGGATATCCTCGGTTAGCCAAGCGGAAATCTACGGTTTGACAAGCGGAGATCCCCAGTTATTCAATTGGAGGTCGCCGGATAGTCAAGCGGAGTTCCCGGGgGGCAAGCCAAACAAAGGAGATCTTAGCATACTGGAGAAATCTTTTACGCGACCTACCGGAAACATTGAAGCACAAGAAGAAATTAAAGTAACAAATTTGCCAATATCTTTAGCGAATGTTCATCAGACAGCAGCTGAATTTCCGGAATTAAATCCGGAACCGGATCCGCTCTCACTTAATTTGGAAGGAATTAGTAgtggattttttattaaagtagaagAACTTAACATTATTCAAAACAGTGAATCTTCACAAAAGGAGATAAGAAcacaaataaaaagtgaaaaatccaGCCGTCTCTCGATAGAAAATATGGGTGTACTGATATCAAGCATGTACAAGTGTAAAGGTTGcggtaaattatttaaactcaagGAGATGTTGAAGGCTCATTACGTTCGTTTACATACAGATATTTATCGATTTCCTTGTGAAGAATGTGGTGAGAAATTCAAGTACTCTTACTATCTCAGTCAACACAAAAGGTTGTGTCACCCAGAAAATAAATCGGCAGAAGCCTCATTTTCTGGAAATTCTAACAGAGATTCACCAACTCAGAGGAAACTGAGACAAAGCTCTAAGAATTCTGATCCGAATGACCgggtttgtaaaatttgtaataaggaATTCCCCAATCCTCCTGCTCTCAGGAACCATCATATTCGAATGCATACGAAGGAATATAAATATCCCTGCGAtatgtgttctaaaaaatttaaactttataaggatttcaacGATCACAGAAGGCGAGTTCATCCAGTGGAAAAATCAACAGAAACTCAACAAAATTCGAGTAAACGTGAAGAAGAATCTAGAGAAACTAAAAAAGACGTAGTAATTAAAGATGATTTAATAGAAATCGTAGAACACTCTATCGAAACTCAACAGGCGGATGTTAAGAAGAAAATGAGGGGAAAACTATTTCAGGACCTGACTTGTCACATTTGTGATAGGAAATTCAGCAGATTGCATGCTCTGAAAAACCATAATGTTCGCTTTCACGCAACAGAAGCTCAACCGAATTTAGAAAAAGGTGAACCAAAAATTAAGGAAGAGCAAGAGCCTCTAGTAACTGAAGCTGAAACTTCTTCATCTAGTAGATTTAAAAAGGCCACTCAGATAAAAGAATCATACATTTGTGAATTTTGTGGTAGGGACTTTGTGCGCAAGGTGAGTTTGCAGATGCATTTCACTCGTACGCACGCGCAAGAATTTAAGTATACTTGTGCGGAATGCGGAAAAGAATTTAGGATCAAGAAAGACCTGGCTAAACACTTGAGGCGAATTCATCAACAAGGAATTGGAGGACGTGAACCAACTGGCGAATTTGTGTGTAAAATTTGCGGCATCAAAGTTTTGCGTAAAGGCACACTTACCATTCATCATCTTCGTAAGCACACtcatcagtttaaattttcctgTAAAGTCTGCGGAAAGAACTTCAAGGTCCAAGGAGATCTTACCACTCACACGAGGCTTCGTCATTTGGAACCACCAGCAATTTGTGAGGTTTGCGGCAAGACTTGCAAGAATAAACATTCCCTTTATGTGCATCAGAAATACAGTCATTTCCAAACTAAATTCCGGTGTCCCTATTGCACCAGATGTTATGCTTCTCAAGAGAATCTTGATCATCATCTCATGTCCCATGAAAAGAGAGAAAGACTTACTTGCTCAGAATGTGAGAATACTTTTGCGAGCAAAACTACTTTGGTGAATCATATTCGATGTGTGCATGCTGAGGAGAAGACGTTTGCTTGTCAGGTTTGCGGAAAATTGTTCCCTTCGTATTCTCGACTGAGGAAGCATCTCATCACTCATACGGGTAAACGactttttgtttgtgaaatttgtggGAAGCGATTCAAACAGAAACCTAGCTTGATCAGTCACAGGAAAAAGAAGCATCCTGGTGAACATCCACCGTTGCCTATTATTCGATTGGATAATGTCCTCAGcgaatttatccaaaaataa
- Protein Sequence
- MRFHQEPPVVCDACGKTYLNSRYLYLHQRYAHYKTAFPCPFCKRFMATQENLDQHIRQQHGQKDRVICDSCGKSFSTTDTLRRHVKFVHCKIRSYSCEICSKSFSRRCELRQHLLIHTGKRLFVCDICGQQFTQKSGLVSHRKRHPGEHPPLPMISGDPQLESGDPQLDKRRSPVCQVEIPGLASGGLRFDKLRSPVSQAPSSDLRLDKRISSVSQAEIYGLTSGDPQLFNWRSPDSQAEFPGGKPNKGDLSILEKSFTRPTGNIEAQEEIKVTNLPISLANVHQTAAEFPELNPEPDPLSLNLEGISSGFFIKVEELNIIQNSESSQKEIRTQIKSEKSSRLSIENMGVLISSMYKCKGCGKLFKLKEMLKAHYVRLHTDIYRFPCEECGEKFKYSYYLSQHKRLCHPENKSAEASFSGNSNRDSPTQRKLRQSSKNSDPNDRVCKICNKEFPNPPALRNHHIRMHTKEYKYPCDMCSKKFKLYKDFNDHRRRVHPVEKSTETQQNSSKREEESRETKKDVVIKDDLIEIVEHSIETQQADVKKKMRGKLFQDLTCHICDRKFSRLHALKNHNVRFHATEAQPNLEKGEPKIKEEQEPLVTEAETSSSSRFKKATQIKESYICEFCGRDFVRKVSLQMHFTRTHAQEFKYTCAECGKEFRIKKDLAKHLRRIHQQGIGGREPTGEFVCKICGIKVLRKGTLTIHHLRKHTHQFKFSCKVCGKNFKVQGDLTTHTRLRHLEPPAICEVCGKTCKNKHSLYVHQKYSHFQTKFRCPYCTRCYASQENLDHHLMSHEKRERLTCSECENTFASKTTLVNHIRCVHAEEKTFACQVCGKLFPSYSRLRKHLITHTGKRLFVCEICGKRFKQKPSLISHRKKKHPGEHPPLPIIRLDNVLSEFIQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -