Basic Information

Insect: Amphibolips quercusostensackenii
Gene Symbol: RpL5
Assembly: GCA_032357855.1
Location: JAUELO010000032.1:804052-840210[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.01 5.1 10.1 1.9 1 23 117 148 117 148 0.93

2 18 8.8e-06 0.0043 19.7 1.0 1 23 154 176 154 176 0.97

3 18 7.4e-06 0.0036 20.0 0.9 1 23 182 204 182 204 0.97

4 18 0.00036 0.18 14.7 0.6 1 23 210 232 210 232 0.95

5 18 0.008 3.9 10.4 1.5 1 23 237 260 237 260 0.97

6 18 2.3e-06 0.0011 21.6 1.1 1 23 267 289 267 289 0.98

7 18 5.5e-08 2.7e-05 26.7 0.9 2 23 296 317 295 317 0.97

8 18 2.7e-07 0.00013 24.5 1.4 1 23 342 365 342 365 0.98

9 18 0.00059 0.29 14.0 1.0 1 23 371 393 371 393 0.96

10 18 1.8e-05 0.0087 18.8 2.0 1 23 404 426 404 426 0.98

11 18 2.6e-07 0.00013 24.6 1.6 1 23 432 454 432 454 0.98

12 18 2.4e-05 0.012 18.4 0.5 3 23 461 481 460 481 0.98

13 18 1.7e-06 0.00084 22.0 0.6 1 23 487 509 487 509 0.98

14 18 7e-05 0.035 16.9 5.5 1 23 515 537 515 537 0.98

15 18 0.0034 1.7 11.6 0.3 1 20 651 670 651 671 0.96

16 18 0.00042 0.21 14.4 0.3 1 23 721 743 721 743 0.97

17 18 0.00053 0.26 14.1 1.2 1 23 750 772 750 772 0.99

18 18 0.0061 3 10.8 0.3 1 16 778 793 778 795 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.01	5.1	10.1	1.9	1	23	117	148	117	148	0.93
2	18	8.8e-06	0.0043	19.7	1.0	1	23	154	176	154	176	0.97
3	18	7.4e-06	0.0036	20.0	0.9	1	23	182	204	182	204	0.97
4	18	0.00036	0.18	14.7	0.6	1	23	210	232	210	232	0.95
5	18	0.008	3.9	10.4	1.5	1	23	237	260	237	260	0.97
6	18	2.3e-06	0.0011	21.6	1.1	1	23	267	289	267	289	0.98
7	18	5.5e-08	2.7e-05	26.7	0.9	2	23	296	317	295	317	0.97
8	18	2.7e-07	0.00013	24.5	1.4	1	23	342	365	342	365	0.98
9	18	0.00059	0.29	14.0	1.0	1	23	371	393	371	393	0.96
10	18	1.8e-05	0.0087	18.8	2.0	1	23	404	426	404	426	0.98
11	18	2.6e-07	0.00013	24.6	1.6	1	23	432	454	432	454	0.98
12	18	2.4e-05	0.012	18.4	0.5	3	23	461	481	460	481	0.98
13	18	1.7e-06	0.00084	22.0	0.6	1	23	487	509	487	509	0.98
14	18	7e-05	0.035	16.9	5.5	1	23	515	537	515	537	0.98
15	18	0.0034	1.7	11.6	0.3	1	20	651	670	651	671	0.96
16	18	0.00042	0.21	14.4	0.3	1	23	721	743	721	743	0.97
17	18	0.00053	0.26	14.1	1.2	1	23	750	772	750	772	0.99
18	18	0.0061	3	10.8	0.3	1	16	778	793	778	795	0.89

Sequence Information

Coding Sequence: ATGATCGAACAGGAAGCACAAAAGGAAGGAACTGCAATAAAATCCGAAAGAGACACTCATGATCGCATTAGATTTGACAAATTAGCTttgCTATCAAATATCAAAGAAGAACCATGGAACAGCGTTTCTATCAAAGTTGAAGACAACCATGTCTTTATTAAATCTGAATCTCCAGACTATGAATCACTTGACGATCAAGATTTTAGAGAAGCAGAAAGTAAGCTCAAGGATCTCTCCAATAATGACAACAGTGACCTTTCAAAAAGAGACGTGAAACAAACtcccaaaagaagaaaaaaaggtagCAAAAGAAAAGACGCATTGTCTACAGAAGAACCTCAAAAACTTCATCAATGTAAAATATGCAACAGTTATTTTCGAACTGCAAGAGCGCTTAAAAGATATGCAAGAAAGGAGGATTTAGAATCACACATGCTCAGTCATCAAAACATGAAAACTTTTGCTTGTGGCATTTGCTCCAAAGATTTCCAGCGAAAGTATAATCTAATACGCCACGAAAAAACACACGTGAAGAAAAATGAGTACAACTGTGCCACCTGTGGAGAACACTTTAATAACCcaaataatcttcaaatacatATGACTTCTCATATCGGACAAAACCTTTTCGAATGCGATATTTGTAAGAGAAGATTCATTACCCGATACGCTATGCAACTGCACAGAATTGATCATAAAGATCAAACTTTCAAATGTAAATATTGCAGTCATCTGGGATTCCCAGAAAAGAGTCAGTTAAAGGCACACTTGCTTATCCACGAAGAGCAGAAGAAATCTTTTATTTGTAACATTTGCTCCAAAAGTTTTGgaactagaaaatatttaaatatacatcAAAGGATACACTCGgatgaaaatgccttagaatgtGAATATTGCGGAAAGAGGTTCATAAAGATTTCTAATCTTAGAAATCATATGCGTACTCATACTACTGAGATTCGTCATGAAGAAGTTAAATCGTCAACATCAGAACATCTTGTTCACTCGGATGAACATGTTTACAAAtgtgaaaattgtggaaaaaccTTTATAACGGCAACTTATCTTAGACTTCACATACGGCGGTTTCACACCGGACAAAATCCTTTTGAGTGCGATATTTGTAAGCAAAAATTCATTTACCGCTCTTCCATAAAAAAACACGTTGTCTCTCATATGGGAGATGTAAGACCTGATGAGCCTTTTTACAAATGTCGCTTTTGCGAGAAATCTTTTTCGACTTACGCCGATTTAAAGGTTCACAAACAGATTCACCCTGAAGCCAAACCGTTCGAATGTAATGTCTGCAAGAGGAGGTTCACACGAAAAGGTTCTTTATGGTCGCATATGCAAACCCACGTTAAAAAATCTGTTGCCTGTGGCATTTGCaacaaaactttcataaaaaattctattctgaAGGTTCATATGCGTACTCACACTGGAGAAAAACCCTATGCATGTCAATCCTGTAGCAAATCCTTTGTCACCAACAACCAGCTTGCCGTTCATATGCGTACTCACACTGGAGAGCGGCCTTTCGAGTGCGAcgtttgtaaacaaaaatataaacatcaATCTAATCTAAAGACCCACAAAAAAAGTCACTGTAAGGGTAAAAGAGTTGATATATTCCCAGATGATAACATGGGCTTGCCTAGTTTTGAAACGGTTCATTTAAACAGTCAGTTTAAGAATGAAATCCAAGATGAGACAAATAACAAATTGGAGACTCAACAGGAGGAAAGTCctgaaaaatttTCATCAGAGGACCTAgaagaagatttcacaataaaatcTGAGTTGCCCGAATATGATTCAGTACGAGAAAGCTACCTTACAGAAGCAGAAAGTAAGCTGATGAATCTGATTAATGGAGACATCCACGAGCTTCCAGAATATGAAATAGATTCTCTAGAAATGCCTACCATAAAACTTGAAAGTATTCACCGGTGTTACCAGTGTCAAGAAGAATTCGAAACCGCCGAAAATCTAAGGTACCACATAGGTGCTAACACTAAAAATAATCTTATAATGCCTCATGTGAAAAGTGCAAATGTTACTTTCAAATCCTGTGACTCACAGAGTGATATGACAAACCAATCACAGAAAAAATCCCCACAAAGTAAACATAATGATTCAACGTTAAAAAAGCCTTACGAGTGCGATATTtgtaagaaagaattaaaatactgGCAGAGTTTAAAGTTGCATGTACAGGCTCATATGGAAGGTGGTAGACCTTACAAGTGTTCTACTTGTTCAATGGCTTTTCCGAAAGACTACTACTTAAACATGCATATGTTAAAGCACACAGCAGATAAACAATACGCTTGTGAAGTTTGCAACAAGGCTTTCAGGAGAAAGGATGGTTTCGTAAAGGTAGTGAAGAACAAGCAGTACTTTAAGCGTTATCAGGTTAAGTTCAAGAGGCGTCGCGAAGGTAAAACCGATTACTATGCTCGTAAGCGCTTGACCATCCAGGATAAGAACAAATACAATACACCAAAATACAGGTTGATTGTTCGGCTCTCAAACAAGGACATCACTTGCcagGTGGCATATTCCAGGATTGAGGGAGACAAGATTGTCTGCGCAGCATACAGCCACGAGCTTCCGCAATATGGAGTTAAAGTTGGACTTACAAATTATGCATCAGCATACTGCACAGGACTACTGCTAGCCAGAAGACTCCTGAAGAAATTAGGTTTGGACTCATTGTACAAAGGCAACACGGAAATCAACGGCGACGAGTATAATGTGGAAGAATTAGACGAAGGTCCAGGAGCATTCAGGTGTTACCTAGACACTGGCCTCATGAGAACCACAACTGGTGCGCGAGTCTTCGGTGCGATGAAGGGCGCCGTCGATGGAGGCTTGAACATCCCCCatagtactAAGAGGTTCCCCGGCTATGACAATGAAGCCAAATCTTTCAACGCCGATGTCCATCGACAACACATTTTCGCACAGCACGTTGCAAATTACATGCGGACCTTGGAAGAAGAGGATGATGACGCGTTCAAGCGTCAATTCTCCAAATACATTCACAATGGCATCACTGCCGATAGTATTGAGGGAATTTATAAGAAGGCGCATGAAGCAATTCGTGCAGATCCAGAGCATAAGAAGGTAAAGAAAGATACCCCAGCAATTAAAAAGCGGTGGAACCGTGCGAAACTCAACCTTTCCGAGAGGAAGAACCGCGTCGCTCAAAAGAAGGCGTCCTTTATTAAGAAACTCCAGGAAAGCGAAGACTAA
Protein Sequence: MIEQEAQKEGTAIKSERDTHDRIRFDKLALLSNIKEEPWNSVSIKVEDNHVFIKSESPDYESLDDQDFREAESKLKDLSNNDNSDLSKRDVKQTPKRRKKGSKRKDALSTEEPQKLHQCKICNSYFRTARALKRYARKEDLESHMLSHQNMKTFACGICSKDFQRKYNLIRHEKTHVKKNEYNCATCGEHFNNPNNLQIHMTSHIGQNLFECDICKRRFITRYAMQLHRIDHKDQTFKCKYCSHLGFPEKSQLKAHLLIHEEQKKSFICNICSKSFGTRKYLNIHQRIHSDENALECEYCGKRFIKISNLRNHMRTHTTEIRHEEVKSSTSEHLVHSDEHVYKCENCGKTFITATYLRLHIRRFHTGQNPFECDICKQKFIYRSSIKKHVVSHMGDVRPDEPFYKCRFCEKSFSTYADLKVHKQIHPEAKPFECNVCKRRFTRKGSLWSHMQTHVKKSVACGICNKTFIKNSILKVHMRTHTGEKPYACQSCSKSFVTNNQLAVHMRTHTGERPFECDVCKQKYKHQSNLKTHKKSHCKGKRVDIFPDDNMGLPSFETVHLNSQFKNEIQDETNNKLETQQEESPEKFSSEDLEEDFTIKSELPEYDSVRESYLTEAESKLMNLINGDIHELPEYEIDSLEMPTIKLESIHRCYQCQEEFETAENLRYHIGANTKNNLIMPHVKSANVTFKSCDSQSDMTNQSQKKSPQSKHNDSTLKKPYECDICKKELKYWQSLKLHVQAHMEGGRPYKCSTCSMAFPKDYYLNMHMLKHTADKQYACEVCNKAFRRKDGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLTIQDKNKYNTPKYRLIVRLSNKDITCQVAYSRIEGDKIVCAAYSHELPQYGVKVGLTNYASAYCTGLLLARRLLKKLGLDSLYKGNTEINGDEYNVEELDEGPGAFRCYLDTGLMRTTTGARVFGAMKGAVDGGLNIPHSTKRFPGYDNEAKSFNADVHRQHIFAQHVANYMRTLEEEDDDAFKRQFSKYIHNGITADSIEGIYKKAHEAIRADPEHKKVKKDTPAIKKRWNRAKLNLSERKNRVAQKKASFIKKLQESED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -