Aque013416.1
Basic Information
- Gene Symbol
- SMARCC2
- Assembly
- GCA_032357855.1
- Location
- JAUELO010000179.1:37058344-37075251[-]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.4 3.9e+04 -2.8 0.1 33 43 79 89 76 91 0.85 2 2 6e-15 3.6e-11 45.3 0.2 3 44 515 556 513 558 0.95
Sequence Information
- Coding Sequence
- ATGAATCTTTTGATCGATATGTTAACGGCAATGGAACGTGCCTTAGTCCAAAATAGATGCTTAGCATTACCCAGCATATTCGTAAGGTCCGATATCGATAAAGCGACGGCCACGAAAGTAAAAGAAGTCGTTCGTCGTCATCAGGGCACAGTCGCTGAAAATGAGGCGGATGCCACCCATATTATTTATCCAGCCGTTGATCCCCTAGAAGAAGAATATGCTCGACCATGCTTACGACGCGATCGTTCTGTATTGCTTCACTGGTACTATTTCCCCGACAGCTACGATTCCTGGACTAATTTAGAACTTCCCTGGGACTATCCGGAAGGAAATTTCGGAAACTCAAATCCAAGAACGATATACAAAGTATCCGCTACTTGGGCTTTAGACTTGGACCAATACAACGAATGGATGAACGAAGAAGATTACGAAGTTGACGACAACGGACAAAAGAAAGTTCACAAATACAGACTCTCTGTGGAAGACCTAATGTCTCAACCTTCCCATCCACCAACTGGTTCAAAGAAACCAAAGAGGAAGAGGTCGCCCACTCCTCCACCAAAATTAGGCAAACgcaaaagtgGTCGAGGACCTTCAGGCGTTCAGGGAACACCCTCGGCTTCCACGACTCTGAAGAAAACTCGTGGTGGTGGTGATGAAGAAGAGGACTTGACACAAGGCATGGAAGATCCTCCTGCCGAGCCTCGAATTGTCGAAGTCGTTGCCACACCAACGAATCCATCAGTTTCAGGCCCAGGTTCTACAGGTGGAAGTAGTGTTTCGACTAATAAAAAGCAAGACAATGAACTCCAGCCTCTCAAGTCAGGAAATATGGCAGATCTCGACGAACCTTCTGAAGGTGACAAAAATAGTGCACACAGTGCCCAAGATCGAGAGGAAAGAGGATCGAGTAAAGAGCGAGGCGAGGGAAGCAAAAGCGACGAACCGGAAGACAATGTCACTGAACAAACTCACCACATCGTTGTACCCAGTTACTCGGCTTGGTTTGACTACAACTCTATCCACACTATCGAGAAAAGAGCTCTCTACGagtttttcaatggaaaaaataagTCCAAGACCCCAGAGATTTATCTCGCTTATCGGAATTTCATGATTGATACCTACCGGTTAAATCCTACGGAATACATAACGTCGACAGCGTGCAGGCGAAATTTGGCAGGTGACGTATGTGCGATAATGCGCGTCCACGCTTTTCTAGAACAATGGGGTTTAATTAATTACCAAGTGGACGCGGAATCAAGGCCTACTCCAATGGGACCACCGCCAACCTCCCACTTCCATGTTCTCTCCGATACACCTTCCGGTTTGGCGCCCGTTAATCCCAATCCACCAAAAACTCCACAGCCTTCCGCGGCGAAAACACTGCTTGATCTGGAAAAGAAGCCTGCGACGCCACTCGGTGCTGCAGGAGACGAAAAACCGATTGCTGGTGCTATGACGAACTTTGGTTTGAAGGTAGATCAGTATTCCCGAAAGCCAGCTGTTCTGAAAAACAAACAGGCCTCAAGCGCAACTCGAGATTGGACGGAACAGGAGACGCTTTTGCTTCTGGAGGGATTGGAGCTTCACAAGGATGACTGGAATAAGGTCTGTGAACACGTTGGATCCAGGACACAGGATGAGTGCATCTTGCATTTCCTTCGACTCCCGATTGAGGATGCCTACCTGGAAGATGGTGGTCCTGAAGGTTTGGGACCGTTGGGATACCAGCCAATTCCTTTCTCGAAAGCTGGAAACCCTGTCATGAGCACCGTCGCTTTCTTGGCTTCTGTAGTGGATCCGAGAGAAGGCATCGAGAttcaccatggaagatcaggcaAATTCGATCCAGCCGCTGGACTTGCTCAGTCAGGAATCGCTGGAACAGGCCCACCAGAACCTCCGGAGGATTCTTCCACTTCCGCAACAGGAACAGCAAATGCCACACCAGCTACTTCACCACACCCAGCCCCagaaaccaaaaaagaagagcCAGAGAAACCGAAAGAAGTAGTAGAGAGCGAACAATCCTCAGCAGTACCTCCAAAGAAGGAAGAAATCCCCGAAAATGAAAGGGATCAACCCGAAAAGATGGAAGTGGATACTAAAGAAGGCGAGGAGGATCCCAAAGCCAAGGTTGATGGCGAAGAGGGTGAAGCTAAGGAGAAGAAAGACAAAGCCTCGGACTCGCCAAACTGTTGA
- Protein Sequence
- MNLLIDMLTAMERALVQNRCLALPSIFVRSDIDKATATKVKEVVRRHQGTVAENEADATHIIYPAVDPLEEEYARPCLRRDRSVLLHWYYFPDSYDSWTNLELPWDYPEGNFGNSNPRTIYKVSATWALDLDQYNEWMNEEDYEVDDNGQKKVHKYRLSVEDLMSQPSHPPTGSKKPKRKRSPTPPPKLGKRKSGRGPSGVQGTPSASTTLKKTRGGGDEEEDLTQGMEDPPAEPRIVEVVATPTNPSVSGPGSTGGSSVSTNKKQDNELQPLKSGNMADLDEPSEGDKNSAHSAQDREERGSSKERGEGSKSDEPEDNVTEQTHHIVVPSYSAWFDYNSIHTIEKRALYEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPTEYITSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLSDTPSGLAPVNPNPPKTPQPSAAKTLLDLEKKPATPLGAAGDEKPIAGAMTNFGLKVDQYSRKPAVLKNKQASSATRDWTEQETLLLLEGLELHKDDWNKVCEHVGSRTQDECILHFLRLPIEDAYLEDGGPEGLGPLGYQPIPFSKAGNPVMSTVAFLASVVDPREGIEIHHGRSGKFDPAAGLAQSGIAGTGPPEPPEDSSTSATGTANATPATSPHPAPETKKEEPEKPKEVVESEQSSAVPPKKEEIPENERDQPEKMEVDTKEGEEDPKAKVDGEEGEAKEKKDKASDSPNC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00089486;
- 90% Identity
- iTF_00089486;
- 80% Identity
- -