Aque044320.1
Basic Information
- Gene Symbol
- -
- Assembly
- GCA_032357855.1
- Location
- JAUELO010059938.1:555-2277[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.1e-11 6.9e-08 34.4 0.0 2 37 18 53 17 59 0.89 2 2 6.4 1.1e+04 -1.4 0.0 12 22 137 148 136 148 0.73
Sequence Information
- Coding Sequence
- ATGCCTActatttataaacgaaaaaatggCAGTACAAGAGGGAATTGGGACCAAGAGAACATGTTTGATGCGATCGACAGTATTCGTAAAAAAGAAATGGGCATTAGAAAAGCTTGTCGGTTTTATAACGTTCCTCATCAAACTCTACGAGTGCGATTAAACGATTCTCCGAGGCAGAATCGAGGACTTGGCCCAACAAGTTGCTTCGgccctgaaaatgaaaaaaaactggcagcacatttaaaaacattatgcaaTTCTGGATTTCCGTGCGATAGACAGAAAGTGCGCCAAATAGCATTTCAATATGCTGAGAATCTCAACATCAACCACAAATTCAACAGAGAAACGCAAATGGCCGGTCGCGATTGGTTGAAATCTTTTATGCGCCGCAATCCAGATTTGTCCATCAGGAAATCTGAAGGTTTGTCCATGAATAGAGCTCTCGGTTTATCAAGAACAGCAGTACAGAAATTTTACGATCTTCTGGAGAATGAAATAAAGGTGCACAGTCTTCAGAATAAaccacaaaatttgtttaattgtgaTGAGTCAGGACTGCAATTGATCAATACTACAGGACAAGTTATTGCTGCAAAAGGTTCAAAAGTAGTTAATCAAATAACTACAGGTGAAAGAGGAGAAACTATAACGCTTCTGGCATGTTGTTCTGCTGAAGGACGTTTCCTCCCACCAGTTTTGGTATTTAAAGGCAAAAATTTGAAGCCGGAATTCGAAGACGGTCTCACACCTGGTTCTAAAGTCTACATGAATGTAAAATCGGCTTACATCAACTCTACTCTTTTCCTGCGGtggtttaaagaacattttttgccTCGCAAAGCTCCAGGAAGAAATATCCTGATATTGGATGGTCATTGTAGTCATTCTGGATCTATTGAGTTGCTTGATTGCGCCGAAGAAAATGGAGTAACGTTGCTTTGCTTACCTCCTCACACTACTCACGCTTTACAACCCCTTGACAAAGCATTTTTCGGTCCGCTAAAATCTCACTTCAAAGTTGAAACAAATACATGGGTGAATCAGCACATTGGACGAAAATTAACGAGATACCAAGTTGGGCCTCTTGTAACATTAGCTTGGAAAAAGGCAGCAACAGTGGGAAATGCCACAAATGGATTTTCGTCTACAGGAATATACCCCTTCAATCGAAATATCATTCCGGATCATATGTTTGTAGTGTCCGATCAGGCAACTGTACAGACAAACGAAAAAGAGCAAGAGATGCGAGAAGAAAATCTCAACGAAAATCCAGAAATCATCTCCGATGACGACGAATCATCTCCGACGGACAGGAATGCCAAGTccccaacaaaaattttatccaaaatttcgTCTGCACCTGCATTGTCAAGAGCTAGATCTACGCGAAAATATGAACCAGTGTAG
- Protein Sequence
- MPTIYKRKNGSTRGNWDQENMFDAIDSIRKKEMGIRKACRFYNVPHQTLRVRLNDSPRQNRGLGPTSCFGPENEKKLAAHLKTLCNSGFPCDRQKVRQIAFQYAENLNINHKFNRETQMAGRDWLKSFMRRNPDLSIRKSEGLSMNRALGLSRTAVQKFYDLLENEIKVHSLQNKPQNLFNCDESGLQLINTTGQVIAAKGSKVVNQITTGERGETITLLACCSAEGRFLPPVLVFKGKNLKPEFEDGLTPGSKVYMNVKSAYINSTLFLRWFKEHFLPRKAPGRNILILDGHCSHSGSIELLDCAEENGVTLLCLPPHTTHALQPLDKAFFGPLKSHFKVETNTWVNQHIGRKLTRYQVGPLVTLAWKKAATVGNATNGFSSTGIYPFNRNIIPDHMFVVSDQATVQTNEKEQEMREENLNENPEIISDDDESSPTDRNAKSPTKILSKISSAPALSRARSTRKYEPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -