Aque023400.1
Basic Information
- Gene Symbol
- -
- Assembly
- GCA_032357855.1
- Location
- JAUELO010000310.1:4572426-4584386[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.5e-06 0.0076 18.3 0.0 2 38 140 176 139 182 0.87 2 4 0.86 1.5e+03 1.4 0.0 3 15 191 203 190 204 0.88 3 4 0.0017 2.8 10.1 0.0 6 34 221 248 218 254 0.86 4 4 8.9e-14 1.5e-10 43.0 0.1 5 44 280 319 279 320 0.96
Sequence Information
- Coding Sequence
- ATGTCTGAGGTCAACAACAGTGAACCTGTTAACACTGTTAATGAAAGCTACTCTTTTAAATGGGGCGATTACCAGAATCATTTATCCGGAGTTGTTCGCCAACTTCTCGAAGAGGATTGCATGGTGGATGTTACACTGTCTGCAGCGGGGGAACGCATTCATGCTCACCGCATTGTTCTTTGCGCTTGCAGCACTTTATTCAAAtaTGATGTTAACGAGTCAAGCGTAAAATCAAAAGATTCAAATGAAGAAAACGCTGATTCTTTCACAGAATTAAACGGAATGGAAGAAGAAGTATTTGACGTTTTAGAACAACCTTACGATGACCTGAACGAACAATCAGAACAGAGTGCAACAGAGGAAAGTTCAGGAGTCAAAAAAAGAAAGCGGCGTTTTCCTGTGAAAAGGGAATACAGCGAAGATATGCTAGCCGCCGCTATTAGCAATTTACGCGAGGGGCAGACTTTAATCGAAGCTTCTACTAAAAACAATATCCCTCGTTCCACTTTGTATATGCGAGCTAAAGCATTAGGCATTCAATTGAATGCTTCTAGAAATGAATATCCTGACGAGTGTATGAGGGCAGCTATAAATTCTGTCAttgAAGGCTACCATATTTTTCGTTCCGAATTGAAGAGAAGTTACGGCTCTGATAAAAGAGAAGCTGCTGTGGAAGCTCTGCAACGTGGAGAAAATCTCACGAAAGTTGCACAACAATATCAAATACCAAAGACAACTCTATTTAGGGACAAGGCTCGTCTAGTCGACGAAGGCAAATTGCCTACATCTTTCTGGAAAAAGAGGAAAACTGAAAAcgaatcgattaaaaaattccgATTGGAAGAAGCTGTTGCTGCCTGTAAGAGTGGAAAAATGTCGCAAGCAGCGGCTTCCGTCTTATATCATATTCCGAAAACTACGATATGGAGACGCTTGCAGCAGCATAATTCAAAGATGAAATCAAAACCAGATTCTGCTGATCCTCTTTCGAGTGTGCAAGATAATATCGAAGGCGATGCCCAATTTACGTACTGCGAgGTCGCTTCCGAAATTCCAGTGACGTACACAATTGAAGATAATGGCATCTCCGGAGAGCAGCAAGTTATAGTTTTCACGCCGGAAGAGGTCGAAGAACTCAATTTGGATGCTCGTACACAAATCATTATAAGTTCGgaTTCAAATCAGGAATTTGTCACCCACTCCACGACCGTCGAAGATGATACTGATTACAGTTCGAATAAAAGTTAA
- Protein Sequence
- MSEVNNSEPVNTVNESYSFKWGDYQNHLSGVVRQLLEEDCMVDVTLSAAGERIHAHRIVLCACSTLFKYDVNESSVKSKDSNEENADSFTELNGMEEEVFDVLEQPYDDLNEQSEQSATEESSGVKKRKRRFPVKREYSEDMLAAAISNLREGQTLIEASTKNNIPRSTLYMRAKALGIQLNASRNEYPDECMRAAINSVIEGYHIFRSELKRSYGSDKREAAVEALQRGENLTKVAQQYQIPKTTLFRDKARLVDEGKLPTSFWKKRKTENESIKKFRLEEAVAACKSGKMSQAAASVLYHIPKTTIWRRLQQHNSKMKSKPDSADPLSSVQDNIEGDAQFTYCEVASEIPVTYTIEDNGISGEQQVIVFTPEEVEELNLDARTQIIISSDSNQEFVTHSTTVEDDTDYSSNKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00064629;
- 90% Identity
- iTF_00064629;
- 80% Identity
- iTF_00064629;