Basic Information

Gene Symbol
Kdm5b
Assembly
GCA_949126905.1
Location
OX421389.1:694266-694750[+]

Transcription Factor Domain

TF Family
zf-MIZ
Domain
zf-MIZ domain
PFAM
PF02891
TF Group
Zinc-Coordinating Group
Description
This domain has SUMO (small ubiquitin-like modifier) ligase activity and is involved in DNA repair and chromosome organisation [1][2].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 0.00026 1.2 9.3 0.3 40 49 26 35 21 36 0.82
2 3 0.00026 1.2 9.3 0.3 40 49 65 74 60 75 0.82
3 3 0.00026 1.2 9.3 0.3 40 49 104 113 99 114 0.82

Sequence Information

Coding Sequence
ATGCTGCTGTGCGACGGGTGCGACGACTCGTACCACACGTTCTGCCTCGTGCCGCCGCTCGCCGACGTGCCCAAGGGAGACTGGCGGTGCCCGGTGTGTCTGGCTGAGGAGGAGCAGATGCTGCTGTGCGACGGGTGCGACGACTCGTACCACACGTTCTGCCTCGTGCCGCCGCTCGCCGACGTGCCCAAGGGAGACTGGCGGTGCCCGGTGTGTCTGGCTGAGGAGGAGCAGATGCTGCTGTGCGACGGGTGCGACGACTCGTACCACACGTTCTGCCTCGTGCCGCCGCTCGCCGACGTGCCCAAGGGAGACTGGCGGTGCCCGGTGTGTCTGGCTGAGGAGGTACGGAGTATGCACTAA
Protein Sequence
MLLCDGCDDSYHTFCLVPPLADVPKGDWRCPVCLAEEEQMLLCDGCDDSYHTFCLVPPLADVPKGDWRCPVCLAEEEQMLLCDGCDDSYHTFCLVPPLADVPKGDWRCPVCLAEEVRSMH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-