Ajug020911.1
Basic Information
- Insect
- Amorpha juglandis
- Gene Symbol
- -
- Assembly
- GCA_949126905.1
- Location
- OX421392.1:3968669-3992057[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.012 0.75 10.8 0.0 1 23 275 297 275 297 0.99 2 12 0.014 0.88 10.6 0.4 3 23 307 328 305 328 0.94 3 12 0.0038 0.24 12.3 1.7 1 23 397 419 397 419 0.97 4 12 0.00011 0.0067 17.2 0.3 2 23 432 454 431 454 0.97 5 12 0.61 38 5.4 0.9 1 23 458 480 458 480 0.97 6 12 0.017 1 10.3 2.9 1 23 487 510 487 510 0.95 7 12 0.53 33 5.6 5.0 2 23 556 577 555 577 0.94 8 12 0.15 9.4 7.3 0.0 2 21 588 607 588 608 0.91 9 12 0.44 28 5.9 1.6 2 23 621 643 620 643 0.96 10 12 0.09 5.6 8.0 0.3 3 23 657 675 656 675 0.96 11 12 4.2 2.6e+02 2.8 2.3 1 23 719 742 719 742 0.87 12 12 0.0012 0.075 13.9 1.4 1 23 748 771 748 771 0.95
Sequence Information
- Coding Sequence
- ATGTTCGACATCCGCGCCTGCAGAGGGTGCCTCTCCACCAAGGGCAAGCTGGAGAAAATTACAGGCATGACAAAAAAGATGTATGTGGCTGTTACAGGGCTAGAGATAGATTCCTGTGACGGCATGCCGACAAACTTTTGCCATGAATGCCACACGAATATAAAAAGGCTCTTATCATTCCGAAGGAGGTGTCGAAGGGCTTACTATGTGATGAAAGAAATCATATCAGTGAATAAACagttAACCCTAAATAACATAATGATGGTAAACAGAAAAAGGACGAACCTACAATCACCGTACAGCTTTAACAAATGGCAGAACGTTTCGTATTTCACAATCGATACGGTACAACCGGACATAGATACTTTGATCGCATCACTAGATAAATACGAGCCTGAAGAGAAAACTACGGATTTGATCAAACAGAACGTCGATACTAGATCGATCGTGTTTCATATCGATATTCAGCCAACGCAAGAGATAAGTATTCCAGAGCCTATCGAGGAAACGCCGGTACCTAAGTGCATTGATTCTATCGAAGATGTCACTATACATGATGCAGTAGCCATGGATATTGACGTTTGTCACCCAGAAGAGCCAGCAATGGATGCTGAGAAAGTCAGCAGTGACGATGAAAGCGACGACGCGATAAACACAAAGGAAATTTCGCTCAAAAAGAAacctaaaaaaaattacctgtCAAAGAACATTCTCGAATCTTGTGCGATATTGGCCGAGACGAAGATTCGTGTATTAAGTATGAAGGAACAGAGACAAGCTTTCAAAAAGCGGTTGGAGGAGGGCGAATTCAAAACTGCTAAGTACAAGTGCAGCATCTGTGTTGTGATCTTGGAGAGCCTGGACCAATTGTTGCAGCATATtaagatacataaaaaaagtaatgcATTCACGGTAATTTGCAAAGTTTGTAAGTTGAAGTTCAAAAGTGATGATTATTTGGCATCGCACACATCTGTGACACATTTGTATGAATATAAATGTAAGAAGTGCGATGAACCACCTTTATATActttAAACGATATCATAACGCACCATAAAGCCGAACATCCGAATCCGGACGACCGGAAGGAGCCTTTGAACCGGATGGAGAGGATGACGGATAAATTCGTCGTGACGCAGTGCACGCAGGAGGAGATGCAACTCAGACGGTTTCTGCCAACGTCGGAGCACGAATGTAACGAATGCGGAATGAAGTATGTGCACGCCAACATGTTGGGCAAGCATGTGTCTAAACATAGTGTTCCGGTAAATGTGAACATGGATTCGGTGGTGCAGTGTGATATATGTGGTATATACTATAAGAGTTATTCCTCTTTCTATAATCATATGAGGATTATGCATATGTACACATACCAGTGTAAACAGTGCCCTACATTGGCTTATAACCTCCAAGAAGCGGAACATCATTTGAACACACACGAGGCTCTACAACTGTCGTACCTTTGCGAATTCTGCGATAAACAACTTAAAACAGAAAAGGAATTGATGAATCACCGACACACCAACCATTACACGGAGACTCACACACACCATTGCAATTTGTGTGGTGACTCGCACACCAGCGAAGAGCTGTTGTACCAGCATCAAGTGGTCACCCATGAGACCATCAGCATACACGACCCGTCATCGGGCGACAAGGAGTGTTTCTGTCAGGTGTGCCACTTCCAGTTCACAACCCTCAACGCTTACAAGTCACACGCCATTCGACACGAACACGACGATGCGAAGACATTTGAaaatgTGTGTTACCAATGTGTTAAAGTGTTCGACACTGTTGATGAATTGGCGGCGCATAACCAAACCTcttgtaaaaaaatctacaaaattaaatatccaGTCAAATGCCCTTATTGCGATGAAATAATGCACACGGGCAAACAGTATTACCGACATCAGAAGCGGGAGCACAACAGTCAAACGTACAGGCCTGTCGGATACTCGAAGCTGTGCGAGCAGTGCGGACAGTCGGTGGCGTCCGACCTGAAGGAGCACATGAAGCGTCACAACGCGCCCGAGGAACAAGTCCCCGGGGATGACAGGATCACGGAGTGCGTGCACTGTTACCCGGTGTGCCGGTTGAAAgGTGTACGCAGGTACGCGTCGCACGTGGTGCGTGTACATGTCCGGCGTCCGTACATGTGCACGCTCTGTCCCGCCACCTTCTCCTGGTGTTCGGAATGCTGGGACCATATCATGAAGACACACAGCCCAGCCCTTCCATACACGTGTGAAATATGCGACAAACAATTTTCACACGGGCAATTTTTGGAAGAGCACACAATGTACGTGCACAAGAATGAAATAAAAGTGCCCCGGCCCGACTTCAAATACTCGATGAAACTGTGGGTCTACCCTCACATGAAGCTCAACCTGAGCCTGCTGGACCCGACGGTGTTGCCAGACATACGAATAGAGATGTGGGATTATTCACACGAAAAAAAGGAGATACTCGAGGATTTCACGGATTATGTGGTGCTGGACAGTCCGGAGGTTCCCATGAAGAAAACGACGAAGAAGCGGAAAGCTAAGCAGAGGAAAGAGAAGGGAGAGAGGAAAAAAAGGGTAGCGAGAAAGGTAGAGGGAAAGAGAAAGGTGCAGAGCAAGGTCAGGAAGCGTAAGCCAGTTGTTAAAGTGACAGAAGTCGTGGAGTGTTTGGACAATTTGAAGGTGATGGAGCTAGATGGAGAGAATTACGTGAATATTAATGGGATATTGTACAAAATACAGCCGTGA
- Protein Sequence
- MFDIRACRGCLSTKGKLEKITGMTKKMYVAVTGLEIDSCDGMPTNFCHECHTNIKRLLSFRRRCRRAYYVMKEIISVNKQLTLNNIMMVNRKRTNLQSPYSFNKWQNVSYFTIDTVQPDIDTLIASLDKYEPEEKTTDLIKQNVDTRSIVFHIDIQPTQEISIPEPIEETPVPKCIDSIEDVTIHDAVAMDIDVCHPEEPAMDAEKVSSDDESDDAINTKEISLKKKPKKNYLSKNILESCAILAETKIRVLSMKEQRQAFKKRLEEGEFKTAKYKCSICVVILESLDQLLQHIKIHKKSNAFTVICKVCKLKFKSDDYLASHTSVTHLYEYKCKKCDEPPLYTLNDIITHHKAEHPNPDDRKEPLNRMERMTDKFVVTQCTQEEMQLRRFLPTSEHECNECGMKYVHANMLGKHVSKHSVPVNVNMDSVVQCDICGIYYKSYSSFYNHMRIMHMYTYQCKQCPTLAYNLQEAEHHLNTHEALQLSYLCEFCDKQLKTEKELMNHRHTNHYTETHTHHCNLCGDSHTSEELLYQHQVVTHETISIHDPSSGDKECFCQVCHFQFTTLNAYKSHAIRHEHDDAKTFENVCYQCVKVFDTVDELAAHNQTSCKKIYKIKYPVKCPYCDEIMHTGKQYYRHQKREHNSQTYRPVGYSKLCEQCGQSVASDLKEHMKRHNAPEEQVPGDDRITECVHCYPVCRLKGVRRYASHVVRVHVRRPYMCTLCPATFSWCSECWDHIMKTHSPALPYTCEICDKQFSHGQFLEEHTMYVHKNEIKVPRPDFKYSMKLWVYPHMKLNLSLLDPTVLPDIRIEMWDYSHEKKEILEDFTDYVVLDSPEVPMKKTTKKRKAKQRKEKGERKKRVARKVEGKRKVQSKVRKRKPVVKVTEVVECLDNLKVMELDGENYVNINGILYKIQP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -