Basic Information

Insect: Amorpha juglandis
Gene Symbol: -
Assembly: GCA_949126905.1
Location: OX421391.1:2845321-2854771[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.023 1.5 9.9 0.5 2 23 223 245 222 245 0.95

2 8 0.083 5.3 8.1 1.1 1 23 250 272 250 272 0.98

3 8 0.0012 0.073 14.0 0.9 1 23 276 298 276 298 0.97

4 8 0.069 4.3 8.4 0.1 1 23 311 334 311 334 0.92

5 8 0.00045 0.028 15.3 1.1 1 23 338 360 338 360 0.99

6 8 7.3e-06 0.00046 20.9 1.1 2 23 394 415 393 415 0.96

7 8 0.036 2.3 9.3 0.1 1 12 421 432 421 440 0.84

8 8 2.5 1.6e+02 3.5 0.6 2 23 450 472 450 472 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.023	1.5	9.9	0.5	2	23	223	245	222	245	0.95
2	8	0.083	5.3	8.1	1.1	1	23	250	272	250	272	0.98
3	8	0.0012	0.073	14.0	0.9	1	23	276	298	276	298	0.97
4	8	0.069	4.3	8.4	0.1	1	23	311	334	311	334	0.92
5	8	0.00045	0.028	15.3	1.1	1	23	338	360	338	360	0.99
6	8	7.3e-06	0.00046	20.9	1.1	2	23	394	415	393	415	0.96
7	8	0.036	2.3	9.3	0.1	1	12	421	432	421	440	0.84
8	8	2.5	1.6e+02	3.5	0.6	2	23	450	472	450	472	0.95

Sequence Information

Coding Sequence: ATGGCAAGTGGCTTGGACATAAATGTGTTGATAAAACATTTGGTAAATGGCACTCTGGGAGAGAATTTATGCATTATTTGCTTGGAGCAATTGAACGAgtcatatgaaaatatttttacgaaGATTTGCAAGGAAGACAGAGAATATTGCATAGCCGATGTGCTAGAGAAGGTTTGTCAGATAAagTTTGATGATGTAACAGCCAACTACAATGtatgtttaaaatgttttgtgAGCGCATCATTGTCGTACAAATTCTTTTTATTAAGCAAGACAAGTGAAGAAGTCCTGAATTACTACACTGATCAGTTAAAGCAAATCATTGCTACACTTCCCCAAGACAGGCTTGATGATGCACTTTACATACCTTTGCCTACGTTTACTCCGAATACATTCAGCTTTAATTTTGATCTGGACGGTATTGCTTCAAGCGGACCAGAAAAACCTACCaacttaaataaagaaatagcaGTTAAAAATGATGATGAGGTTGTAATGATAGTACAAGAAGATGGTGCATCAATGTTCTATAAGGTACTAGAGAATGGACAGTTGATGCTTCTCGATGAGTCTCAACAAAAGAATTATAATGAAGCATTGGCTAATTCTGGAAAGACTGTGGCTAAGAAAACACAAAGGAAGAAAAGAGGCCCTATGGCATACAAGTCATGTAGTTTATGTCCAGTAAAGTACCGGTTTGTGGCTAAACTACAGAGCCACATGAAATTGGAGCATAATGTTAATCTCTATGTTTGTAAGGTATGCAAAGCAATAACCGAGAACGAGTTAGAGTATCACAACCATTTGAAAACTCACACAAATATACATCAATGTGCGCTTTGTAACACAGTTTTCAAGAAGCGAGACACCATTATAGCACATCTCAAATGGCATGAGAAAATGAAGAATATTGGACAGTCAGAAAGCGCTCATATATGTGAGATATGTGGTGTGATACTGGAGGATGAGCGCAGTTTGAAGGAGCACTGGGATGTCCGCCATAACAAGAAGTACACGTGCTACTACTGTGGACGTATGTATAAAGGAGAGATCAGCTTTGAAATGCACATAAAGAAACATGAACAGCACATGGAGGGGAAGATGAAAaaGCATGCCTCAGAAGCATCCAAAAACTCTGAGGATAAAGTGAAATCGCCTAATGTCAATAAATCCCGTTGTATTTGTAACATATGCGGTCGGAACTTTGTCGATCAGAGGTCTTTGCTATGGCATCAGCGGTTGCATAATAATGAGAGACCATACACTtgtgatGAGTGTGGGCGCGCGTTCGTGTCTGTGAACCGACGCAACCAGCACGCGGTGTGCGCGCACACTGCGCCGGCGCGCCGCTGCCCGCTCTGTCCCGCGCTCTTCCATCTCACCTCCATGGTCAACACGCACGTCAAGAAGgtACACCTGAAAGCTCACAAGCGCAGGAACCGCACGAGTAAATATCAAAATGTGTACTGGCGTACGGAACCCGTGCCGATACAAGAACTGAGCGTGTCCatacaaaatgaaatattggaGATGCAAGCGGCTAAAGAAAATGAACAGGAAGCTTGGGTGAGGGTACTTTTGACATTATTTAAACTAGCATTTAGTCGCGAGCTCCGCATGAAATTCTGCACCATCATATTTCGGCATACTTCCATATAA
Protein Sequence: MASGLDINVLIKHLVNGTLGENLCIICLEQLNESYENIFTKICKEDREYCIADVLEKVCQIKFDDVTANYNVCLKCFVSASLSYKFFLLSKTSEEVLNYYTDQLKQIIATLPQDRLDDALYIPLPTFTPNTFSFNFDLDGIASSGPEKPTNLNKEIAVKNDDEVVMIVQEDGASMFYKVLENGQLMLLDESQQKNYNEALANSGKTVAKKTQRKKRGPMAYKSCSLCPVKYRFVAKLQSHMKLEHNVNLYVCKVCKAITENELEYHNHLKTHTNIHQCALCNTVFKKRDTIIAHLKWHEKMKNIGQSESAHICEICGVILEDERSLKEHWDVRHNKKYTCYYCGRMYKGEISFEMHIKKHEQHMEGKMKKHASEASKNSEDKVKSPNVNKSRCICNICGRNFVDQRSLLWHQRLHNNERPYTCDECGRAFVSVNRRNQHAVCAHTAPARRCPLCPALFHLTSMVNTHVKKVHLKAHKRRNRTSKYQNVYWRTEPVPIQELSVSIQNEILEMQAAKENEQEAWVRVLLTLFKLAFSRELRMKFCTIIFRHTSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00859015;
90% Identity: -
80% Identity: -