Basic Information

Insect: Amorpha juglandis
Gene Symbol: -
Assembly: GCA_949126905.1
Location: OX421368.1:6701578-6704221[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.15 9.2 7.4 0.1 3 23 39 59 37 59 0.95

2 8 0.24 15 6.7 0.6 2 23 160 182 159 182 0.89

3 8 3.8e-05 0.0024 18.6 2.4 1 23 195 218 195 218 0.97

4 8 3e-05 0.0019 19.0 6.0 2 23 259 280 258 280 0.97

5 8 0.00095 0.06 14.2 5.4 1 23 286 308 286 308 0.97

6 8 1.3e-05 0.00081 20.1 4.3 1 23 314 336 314 336 0.98

7 8 1.4e-05 0.00087 20.0 3.4 1 23 342 364 342 364 0.98

8 8 0.032 2 9.4 4.2 1 20 370 389 370 391 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.15	9.2	7.4	0.1	3	23	39	59	37	59	0.95
2	8	0.24	15	6.7	0.6	2	23	160	182	159	182	0.89
3	8	3.8e-05	0.0024	18.6	2.4	1	23	195	218	195	218	0.97
4	8	3e-05	0.0019	19.0	6.0	2	23	259	280	258	280	0.97
5	8	0.00095	0.06	14.2	5.4	1	23	286	308	286	308	0.97
6	8	1.3e-05	0.00081	20.1	4.3	1	23	314	336	314	336	0.98
7	8	1.4e-05	0.00087	20.0	3.4	1	23	342	364	342	364	0.98
8	8	0.032	2	9.4	4.2	1	20	370	389	370	391	0.93

Sequence Information

Coding Sequence: atgagtGCTGATGCTGCATCTTTACCGTGTCCAATATGTTCTCACACAGGGGTTTTTCATACCGCGCAGTCGTTAAGAGACAGATTAATACATGTCTctacaaataacattatttgtCCAGTATGTCAAGAGGAAGTGTGTGGATTAGATAAGTTAACTATACATCTATTCAGTCATGTAAAACTTCTGCCACCCAGGGAATGTGTAGTAAAAGACAAGAACAAGGCACCTCTAAAAAGTGAAAACCAAAACGTACCGCAACACAAGAAGTCTAAAACGTTGGCGTCTAAAAATAAAACGTCTTCACCCACCATAAATGCGCCagtaaaatttgtaaaaatatatccaaAGTTACCTGTGATATCTTTAAATACCGTACCAGTTATAGACATATCCCAGAAGACTGTGGATGAATCGAAGCAAGTAGTTCAATCAGTATACGTGAAAACTGAAGCTGCGATATtgtcaacaaacacaacatGCAACATATGTGGCTTACAATTTGTTGATGTTAATATCCTTAAGATGCATAGATGTCTAATTCATAACATTGATGAAAACTCGAATCAAACTGTTACCCGTTATCATTGTCATTTATGTCCAAAGAATTTTAAAATGAGAGGGTCTTTAATGGTTCATCTGAGAGTTGCACATTATGGGTTTTTGTCCGGGAACACAGATTCTACAGTTGACGAAGAAAGTAACGGAAAAAATGTAGATCAAACCGCTAATGACAAACCTCTCACTGTCCAGAGACATGATAATAAACAATGGCAATGCGATGTttgcaaaaaatgttttacaacGAAATATTTCCTCAAGAAACATAAACGACTTCATACAGgTGAAACCCCATACGCCTGTACGCAATGTAACAAGACGTTTACTTTTCAGCAATCGTACCACAAACATCTTTTGTACCACAATGATGAAAAGCCACACACATGTAGTTATTGTGGGCGAGCTTTCAAAGAACTATCTACACTTCATAACCATCAACGTATCCACACCGGTGAAAAGCCATTTTCATGTGAAACATGcgGTAAATGTTTCCGACAACGGGTGTCGTACTTGGTACACAGAAGGATACATACAGGTGTTATGCCATATAAATGTACAGCATGCGATAAAAGTTTTCGATACAAAGTATCACAAAGAACTCATAAATGTCAAGCACAGCCCCCAGGTACGGTAGTTCGTCAAGCAGGTGATTTAGTTGAGAAGCTTAAAAAGAAGCATGCCAAAACGAATAAAACATTTTCAGACCCAATGCAAGCTCAGAAAACAAATTTGACCTTTGCTGAAGTATCTGATGTGAATGCTGAATTAGTTCGGACAGGAGCTAAATTATCATTAGAAGATATGGAATCCGAAAATTTTACTTTAATCGCGGACCCTTTCAATGAAGTTCATAATTCGCACCAAAAATTAGAGCTGACGAGTTCAGCGACAACAAGTAAATGCAATATAGAACATGTTGATATCCTGCATACAGAGATTGAAGAATTAATGGACAGCATTCCAGTTGAAGATAAAAATGTACATTCTCCATCAGAAATATTGAAAAACTTGTGCTTATCAAAAGAAGAGGATTATATTGGTATTTTGCAAGAAAGAGCTGATGAAAAGAGTTTTGATCTTTATAAGGATTTTAATGGCTTTTTGTAa
Protein Sequence: MSADAASLPCPICSHTGVFHTAQSLRDRLIHVSTNNIICPVCQEEVCGLDKLTIHLFSHVKLLPPRECVVKDKNKAPLKSENQNVPQHKKSKTLASKNKTSSPTINAPVKFVKIYPKLPVISLNTVPVIDISQKTVDESKQVVQSVYVKTEAAILSTNTTCNICGLQFVDVNILKMHRCLIHNIDENSNQTVTRYHCHLCPKNFKMRGSLMVHLRVAHYGFLSGNTDSTVDEESNGKNVDQTANDKPLTVQRHDNKQWQCDVCKKCFTTKYFLKKHKRLHTGETPYACTQCNKTFTFQQSYHKHLLYHNDEKPHTCSYCGRAFKELSTLHNHQRIHTGEKPFSCETCGKCFRQRVSYLVHRRIHTGVMPYKCTACDKSFRYKVSQRTHKCQAQPPGTVVRQAGDLVEKLKKKHAKTNKTFSDPMQAQKTNLTFAEVSDVNAELVRTGAKLSLEDMESENFTLIADPFNEVHNSHQKLELTSSATTSKCNIEHVDILHTEIEELMDSIPVEDKNVHSPSEILKNLCLSKEEDYIGILQERADEKSFDLYKDFNGFL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01010780;
90% Identity: iTF_01010780;
80% Identity: -