Ajug020880.1
Basic Information
- Insect
- Amorpha juglandis
- Gene Symbol
- -
- Assembly
- GCA_949126905.1
- Location
- OX421392.1:3495180-3507071[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.025 1.6 9.8 0.1 1 23 307 329 307 329 0.97 2 11 0.00011 0.0068 17.2 4.7 1 23 370 392 370 392 0.98 3 11 0.13 7.9 7.6 2.7 1 23 399 421 399 421 0.96 4 11 0.29 18 6.4 3.7 1 23 425 448 425 448 0.96 5 11 0.053 3.3 8.8 2.2 1 23 459 484 459 484 0.97 6 11 2.1e-05 0.0013 19.5 0.4 2 23 489 511 488 511 0.95 7 11 1.8e-06 0.00011 22.8 2.4 1 23 519 541 519 542 0.96 8 11 5e-05 0.0032 18.3 1.0 2 23 551 572 551 572 0.97 9 11 0.087 5.5 8.1 1.1 1 23 583 606 583 606 0.96 10 11 0.18 11 7.1 2.8 1 23 611 634 611 634 0.94 11 11 0.65 41 5.3 0.2 3 11 648 656 647 659 0.89
Sequence Information
- Coding Sequence
- atgaaccTTTTCGCCGAATGTGATGTAAAAGTGGCGGCAAAGGTTTACGAATATAAAGAAGCGGTGCCCAGTAGCAGCCACATTCAAATAGTCGATACAATTTGTTTCTGTTGTCGAATTACCGATGTGCcactaataaaaataagcgGTTGCTCGCATAATGGTTATttaatgtgttattttattaagaaaATAAACTTATCAACATCAATGGTCTGCCAATACTGCcacaacatattaaaaaaaattgaaaaattcaaGAAACAAGTGGAACAATGTATTATAAATGATCAACAGCCAATCggcacaaaaataataaacacactcCAAAAATCGAAAACTGTGACAACATCAATCAATCCGGAAGATTTGAAACCCATAATACATAACAGTATATTTATACCTGAAGCTGATGTAAACGAATCAAACGTGGACATTAAAGACGAATACCTCTCCGATGAGAGTACGAAATCAGCTTTCGAAGATGTCCTGGAGGATTGTCGATTGGGAGATAATGTAGAAGTTGAGATACCAGTGTGCCAAGTTAGGTCAGAGGAGAAGAAATTGCCAAATATGATGAAGTTGCTtgagaGTCAGTCAAAGCCAGATTTCAGAAAATCACTAATAGTAGACCACAGTTACGCCACAGCCAAACCCGGATCAGCGAAAAAACCGACAAAAACCATAAAAGAAATACAACTGGAACTAAAAGATAAGCGAAGCACTTCACATCCCGTTGCAAATAAGGAAAAACTGACTACCAGGTCAGGGAATTATGCAGTCccaaatattaatgtaaatcCAACCTCGTCGAGTGCATTAATGAAGTCATCGAATAATAGAAGGATCGCTCGAACCCACATATTGGCGCGAAAAAGAAATTCGCAAGCGGAaactttgataaaaaatataaatctattcCAATGTGGGATTTGTTTAAAAAAGTTTGACGTGGAGGCAGCCTACGATAATCATTTGAAGGAACACGAGAGGGTGAGATTTACAAGAAGCGATCTATACGGTAAGATACGAATGATATATCTCAACAGGGAAGAAATGGAGAGGGAAAGAGAGAAGAGAAGACTGAAAGAGTACGCGAAATATAATCACAAATGCGAGGATTGTCTCACAAGTTTCGATCATGAGGATTCTCTGCGGAATCATATGAAGAAACATGACAatAGTAAAAACAAACATGTATGTGAAGTTTGTAAGTGCGTTTATCTGTCGCAATCGGGgttgaaaaatcacacagacTCACATTGGAGGAGGTTTCAATGCATGGAGTGTGATGAGAAATTTGTACAGGACATACATTGCATCAGACATTACAATAAAGAACACGGGGAAGATGGCAAACGGATAGACGATTACTATTCTTGTCATTATATGGACTGTGACTACATTGGCAAtGATTATTCCTCATACAGGAATCATGTGAGACAAAAGCACACTTTAAAAGTACCTTGTAATGTATGCGGTAAAAATTTCACAAGTAGCACTTCTATGAAAAACCATGTCATGAAAATCCACGAGAAAACCCACAACCGTATATACAAATGTAAGGAGTGCGATAAACAGTATAATGATAAAAGTGCTTTGATAATACACACACGATCACATCACAGGACAAATCCAGACGAGATGGCTTACTGTAAAGACTGTGATAAGCAGTACAGTATGAAATATTACCTTGATGTTCATCTGAGGACTCACTCGAGGCATGTCAGTGATGATATGAAGAGGTACACCTGTGATATATGCTGCGAAAAGTTCATCAGTAAACAGGCAATCAGAAGTCACATAGAAATAAAGCATTTAGGGGTGACCTTCCAATGCAGCATCTGTAATAAGATTCTAAGCTGCACAAGAGCTTTAAGAAAACACGAAAGAGACAAACACAGTGGCGCGCCTCCTCACCCACCGCCGGAACGGAAACTGTGCCAAATATGCGGGAAAGGGTTCACGGTAAGAAGGTAG
- Protein Sequence
- MNLFAECDVKVAAKVYEYKEAVPSSSHIQIVDTICFCCRITDVPLIKISGCSHNGYLMCYFIKKINLSTSMVCQYCHNILKKIEKFKKQVEQCIINDQQPIGTKIINTLQKSKTVTTSINPEDLKPIIHNSIFIPEADVNESNVDIKDEYLSDESTKSAFEDVLEDCRLGDNVEVEIPVCQVRSEEKKLPNMMKLLESQSKPDFRKSLIVDHSYATAKPGSAKKPTKTIKEIQLELKDKRSTSHPVANKEKLTTRSGNYAVPNINVNPTSSSALMKSSNNRRIARTHILARKRNSQAETLIKNINLFQCGICLKKFDVEAAYDNHLKEHERVRFTRSDLYGKIRMIYLNREEMEREREKRRLKEYAKYNHKCEDCLTSFDHEDSLRNHMKKHDNSKNKHVCEVCKCVYLSQSGLKNHTDSHWRRFQCMECDEKFVQDIHCIRHYNKEHGEDGKRIDDYYSCHYMDCDYIGNDYSSYRNHVRQKHTLKVPCNVCGKNFTSSTSMKNHVMKIHEKTHNRIYKCKECDKQYNDKSALIIHTRSHHRTNPDEMAYCKDCDKQYSMKYYLDVHLRTHSRHVSDDMKRYTCDICCEKFISKQAIRSHIEIKHLGVTFQCSICNKILSCTRALRKHERDKHSGAPPHPPPERKLCQICGKGFTVRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -