Ajug013674.1
Basic Information
- Insect
- Amorpha juglandis
- Gene Symbol
- -
- Assembly
- GCA_949126905.1
- Location
- OX421381.1:2974441-2990252[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.015 0.97 10.4 3.1 1 23 386 408 386 408 0.96 2 12 0.049 3.1 8.8 0.7 2 23 416 438 416 438 0.95 3 12 0.016 1 10.4 1.6 1 23 442 464 442 464 0.97 4 12 0.13 8.2 7.5 0.1 1 23 469 492 469 492 0.98 5 12 2.9 1.8e+02 3.3 0.5 2 23 500 522 500 522 0.93 6 12 0.0064 0.4 11.6 0.1 1 22 534 555 534 559 0.93 7 12 0.0018 0.11 13.4 0.4 2 23 578 600 577 600 0.96 8 12 0.14 9.1 7.4 2.7 2 23 620 642 619 642 0.96 9 12 0.00071 0.045 14.6 0.6 2 23 656 677 656 677 0.96 10 12 0.00014 0.009 16.8 0.0 2 23 683 704 682 704 0.95 11 12 0.0098 0.62 11.1 1.6 1 23 710 732 710 732 0.94 12 12 1e-05 0.00064 20.4 1.1 1 23 738 761 738 761 0.98
Sequence Information
- Coding Sequence
- ATGGTTTGCTATTGTTGTGTGAAAGGTTGCAAAAACAAcaccaacttaaagaaaaaggatCCCAACTACACGGTCTCATTTCATGCATTCCCAACAAACCCAGAACTGAGGATAAAATGGCTGAGAGCAATAGGAAGGCCTACCTGGGAGCCACCAACTCATACGCGCATATGCAGTGCACATTTCAGCTATGATCAGATAAGTCATGAAAGCTGCAGGACTAGGATAAAAGAAGATGCATGTCCAGTGAATGCTTTACCTCTGAATTCAAACTTTGAAGCCTCTGATTTGGAAGTATGCAGAATATGCTTGGCCACTGATGTGCATATGCACAGTTTGCAGGAAGGAACACTGAAATCATGCATGGAGTCTATTGGTGGTATGAATGAAACCCATAATATTGAGGGGTTGCCACAGTTTGTGTGCAGTGAATGTGCAGCCCATCTAATAAGGTTTTACCGTGTAGTAGAGAAGAGTGTTATTGCCCAAGCAACATTGCTTGATATATTTGCACAACATGGTgagATAACAAAAAGCTTAATCAAATGCCAAGACAGAAAACGATTAAACTTAGTCTCATCTCTGAACTattgtaaacaaacaaatatttataattacacttaCAATTATGAAAATGGTTCTTCTTGTCTTGTGAAATCAGAATGTAAAGACCCAAGCAAATTTACACCCAACGTTATTAATCTAAAAGAAGATATtagtgttttattaaaaaatgatgGTCATGCAGAAATAAAAAGCattaatttagaaaatataaatcCTAAACATGATAAAAAAGATGTAGGATTAAAATCAACAACTAATGCTAAAAACGATGAGACAGAAAATATAgtacaaattaataattatgagcCTTTAGaagatatcaaaataaattttaccgaTGATGATTCTCTTTGGGAAGACTATCATGAAGAACCTGTGGTGAAAGTGAAACATAAACACAAAAAAAAGAAAGTTATCATTGATGATACAACtgaagagaaaaaaataaaaacaaaaaactcctGTGGATTAACTCCTGATGAAGTGGATATGCAGAATTACTTTGATATTGTGCAATTATCAtTACAGGAGCAAATAGACGAGTGGCAGAAGTCCGTGGCTCGAAGACACTTCACCAGTGAAACTACGTACCGCTGCGAGACATGTTCCAAAGTGTTCGCTCATATCAACACCTTCAGGATGCATAGCAGCAGCCACGATATTAGACGCGGCAAAGCAGAGTGTCCGGTGTGCAAATTGCGCTTCAAGAACGATGTGTTGGTAAAATCTCACAGGAGCCGAACCCACGGGAAGAAATTCTATTGCAAGTCCTGTCCTAAAGTGTTTAATAATGTTGCGGTAGCTAAAAAGCACCATCGCTGGCACTCCGGGCACGTGTACACGTGCGACACGTGTCCGTTCGCGAGCGCGCACGACTCGGCCGCACGCGCGCACGCACGCACCGCGCACGCGCACCACAACACGCGCGCCACGTGCGTCGTGTGCGGACGAGCCTGTCTCTCCGCACGGGGATTGGTGCTGCACCACGCCACTGCGCACAGGGACACGCAGGAGACAGAAGGTAACCCAGCGTTTCGCTGTGAACAATGCGATATCAGCTTCGCGTCAGAGGGCGCTAGACGTGTACATATTTTAACATCCAGCCAGCATAAGAAAAAACCCAATTTGTTTGACACAGTCCCGATAGATCCATCGTTAAAAACAACGTGCAGTAAGTGCGGTGTCGAGTTCCAGTCGCTTAAGGAACTAATAGACCACACAAGATCAGAACACCGTCGATCTCCTCAGAAGAAAACTAGCTGGAGTCTGCCTGGAGACTCTTATCCTACACAGTGTGAACATTGTGGTGAAACAGTGAACAATCGCAAGGAACATTGGTGGCATGTGCGTAAACAACATCCCAAAGAGAAACACACGTACCAGCCGGTCATCACCGCCGTCTGTGAGACGTGTGGAAAAGGATTTCAGAACAGTACCAAGCTGCAGCTGCACGAGCTGCGCCACGCTATGCCGCGCGTGCCGTGCGGTGTGTGCGGGCGCGCGTTCTACGACAAGTACGCGCTGGCGCGCCACGCCACGGTGcacgccgccccgcgcccgcacgCGTGCCGCGCCTGCCCGCGCGCCTTCCGCCTGCGCGCCTCACTGCACCGACACGCGAGGGTTCATACAGCAGTCACACCGTACGAGTGCACAATGTGTGGGAAGAAGTTCAAATATTCCACCAGTGTTAACTTACATGTGCGCACTGTTCATTACAAATTGCCGCATCCGCCCAGGAAGAAACGAAGCCGAGCAAGAGACTTTAGTTCTGACACCATTAATGAGaatactatttaa
- Protein Sequence
- MVCYCCVKGCKNNTNLKKKDPNYTVSFHAFPTNPELRIKWLRAIGRPTWEPPTHTRICSAHFSYDQISHESCRTRIKEDACPVNALPLNSNFEASDLEVCRICLATDVHMHSLQEGTLKSCMESIGGMNETHNIEGLPQFVCSECAAHLIRFYRVVEKSVIAQATLLDIFAQHGEITKSLIKCQDRKRLNLVSSLNYCKQTNIYNYTYNYENGSSCLVKSECKDPSKFTPNVINLKEDISVLLKNDGHAEIKSINLENINPKHDKKDVGLKSTTNAKNDETENIVQINNYEPLEDIKINFTDDDSLWEDYHEEPVVKVKHKHKKKKVIIDDTTEEKKIKTKNSCGLTPDEVDMQNYFDIVQLSLQEQIDEWQKSVARRHFTSETTYRCETCSKVFAHINTFRMHSSSHDIRRGKAECPVCKLRFKNDVLVKSHRSRTHGKKFYCKSCPKVFNNVAVAKKHHRWHSGHVYTCDTCPFASAHDSAARAHARTAHAHHNTRATCVVCGRACLSARGLVLHHATAHRDTQETEGNPAFRCEQCDISFASEGARRVHILTSSQHKKKPNLFDTVPIDPSLKTTCSKCGVEFQSLKELIDHTRSEHRRSPQKKTSWSLPGDSYPTQCEHCGETVNNRKEHWWHVRKQHPKEKHTYQPVITAVCETCGKGFQNSTKLQLHELRHAMPRVPCGVCGRAFYDKYALARHATVHAAPRPHACRACPRAFRLRASLHRHARVHTAVTPYECTMCGKKFKYSTSVNLHVRTVHYKLPHPPRKKRSRARDFSSDTINENTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00063661;
- 90% Identity
- iTF_00063661;
- 80% Identity
- iTF_00063661;