Ajug020876.1
Basic Information
- Insect
- Amorpha juglandis
- Gene Symbol
- -
- Assembly
- GCA_949126905.1
- Location
- OX421392.1:3454176-3467372[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.2 13 6.9 0.2 1 23 121 144 121 144 0.94 2 11 0.0015 0.093 13.6 4.7 1 23 151 173 151 173 0.98 3 11 8.1 5.1e+02 1.9 0.5 1 19 177 195 177 200 0.73 4 11 1.3e-05 0.00083 20.1 0.9 1 23 236 258 236 258 0.98 5 11 0.0011 0.068 14.1 1.4 3 22 270 289 269 293 0.89 6 11 0.00025 0.016 16.0 1.2 1 23 334 356 334 356 0.98 7 11 0.013 0.85 10.6 0.5 2 22 365 385 364 389 0.90 8 11 3.3e-05 0.0021 18.8 0.4 1 23 397 420 397 420 0.91 9 11 0.0013 0.082 13.8 4.8 1 23 426 449 426 449 0.96 10 11 2.1e-05 0.0013 19.5 2.0 3 23 458 479 456 479 0.94 11 11 0.056 3.6 8.7 3.1 1 23 485 508 485 508 0.98
Sequence Information
- Coding Sequence
- ATGTCGTTTTTTAATCCATATTTACAGAATATACCGTTGTCAGCCATAAAATCGAATTCCAAACTATGCAATCACAAGCTAAAAAGCATATCTTGCCTACTAGAATTCGAAACCGACTTAAAACAAGAGGTTCCGCAAAAGATAGATGTGGAAATAAAAGAAGAGCTGGACACATTCTCAGACCATTCTGAAGATAACAGGTTACTTATTGACTTCAAGAAGACTAAAGTTAATGGAAAGgtaaaaaaaaagaaaaagcgcAAAGAGTTACGCATGTACAAAGAGGTGGAGTTAAACGACCAACAGATAGAAGAGGAGAGAAGACAGGCGACGCTGAGAGATGACTATGTTAACGCGATGTTTCGGTGTGAGAAATGTATCGAATCGTTCCCGAACGGTGATGATATGAAGGATCatgtttatattaaacatgAGTTGAACGCCTCAAACTACAAATGCAGTATATGCGAATGTTCCTTTAGCACCGAGGTATCTTTTAATTATCACAAAAACAAGCACAAACGAAGGTACCAGTGTGTGTTGTGTGGGACCAAACATGGGACCAAGCGTAGTGCTGTCAAACACTACGGCGCCGCGCATTGGCTCAGttCCAACATAGACATACAACTAACTAGTAAAAATGAAGATATATGTGAGAAAACCGAGTGCACTGAAGAATTAGATGGtaCAAAGCAGTCGGAAGCCTTCCCTTGCGAGGTTTGCGATAAGACGTTTCGATGGAAGACATCGTTGAGGAAGCATCTAGAGACGCACAGGATAGAAGCGGGCCAGAAACGGAAGCCGTATTGCGAACCGTGCAGattatCATTTACAACATCGTCGAATCTCAGGAAACACGTGAAAACAAGTTCCAAACATCAAATACAATTGAAATTATGGAAGTTAAAACAATCCCTGCCGGATGACGCAACTAGTCCTGAGAAAGAACAGGCGTGTATACAACAGATTAAACATTCCGTGAACAAAGCTAGAGAGCAATATCCGTGTCCGCAATGCGATAAGAGATTCCAGTGGCGAGGGAACCTGCTGAGACATCTGCACAGTCACGAGGCCAGAGCGAACGGCGAGCTGGTATGCGAACCTTGCAACAGAACTTTCTCATCCATCGCAACTTACAAGCAACACATGAAGATAAGCAAGAAACACGTGACCGAAAACGATTTCAAGTACATGTGCAGTGAATGTGGTAAACGGTTCGCTAACAAGACTCGTCTTAAAGACCACGTCGATTGGGAACATCTTAAAAACTACGTGCACACATGCTCCGTGTGTAAAAAGGTTTTCAAAAGCCACACATCACTGTACTTGCACAAGCAAGTGGTACACAAGAACGGACAAGCGGAACATCTGTGCGACCATTGTGGGAAACCCTTCCCGAATCAAGCAAAGCTCCGCAGTCACACGCGTGCGCTACACAGTGGCGAGTGTTGGTATAAATGTAGCTCGTGTCCGGCTCGCTTCGCGTGGCACTCGTGTCTGTCGCGTCACGTGCGACGCGTGCACAGAAACGTATAG
- Protein Sequence
- MSFFNPYLQNIPLSAIKSNSKLCNHKLKSISCLLEFETDLKQEVPQKIDVEIKEELDTFSDHSEDNRLLIDFKKTKVNGKVKKKKKRKELRMYKEVELNDQQIEEERRQATLRDDYVNAMFRCEKCIESFPNGDDMKDHVYIKHELNASNYKCSICECSFSTEVSFNYHKNKHKRRYQCVLCGTKHGTKRSAVKHYGAAHWLSSNIDIQLTSKNEDICEKTECTEELDGTKQSEAFPCEVCDKTFRWKTSLRKHLETHRIEAGQKRKPYCEPCRLSFTTSSNLRKHVKTSSKHQIQLKLWKLKQSLPDDATSPEKEQACIQQIKHSVNKAREQYPCPQCDKRFQWRGNLLRHLHSHEARANGELVCEPCNRTFSSIATYKQHMKISKKHVTENDFKYMCSECGKRFANKTRLKDHVDWEHLKNYVHTCSVCKKVFKSHTSLYLHKQVVHKNGQAEHLCDHCGKPFPNQAKLRSHTRALHSGECWYKCSSCPARFAWHSCLSRHVRRVHRNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00341641;
- 90% Identity
- iTF_01010741; iTF_00858894;
- 80% Identity
- -