Basic Information

Insect: Amorpha juglandis
Gene Symbol: nit2
Assembly: GCA_949126905.1
Location: OX421382.1:13749168-13763695[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.016 1 10.4 4.1 1 23 261 283 261 283 0.99

2 11 0.00072 0.046 14.6 0.9 2 23 291 313 290 313 0.96

3 11 0.0029 0.18 12.7 5.9 1 23 344 367 344 367 0.97

4 11 0.0058 0.36 11.8 0.3 1 23 371 394 371 394 0.96

5 11 0.014 0.85 10.6 0.0 2 20 412 430 412 432 0.94

6 11 1e-05 0.00064 20.4 0.6 3 23 446 467 445 467 0.97

7 11 0.031 1.9 9.5 4.5 2 23 489 511 489 511 0.97

8 11 0.00038 0.024 15.5 2.5 1 20 522 541 522 544 0.93

9 11 0.0045 0.29 12.1 1.0 1 19 550 568 550 573 0.86

10 11 3.5e-06 0.00022 21.9 1.6 1 23 579 601 579 601 0.98

11 11 0.018 1.1 10.2 0.0 1 23 607 630 607 630 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.016	1	10.4	4.1	1	23	261	283	261	283	0.99
2	11	0.00072	0.046	14.6	0.9	2	23	291	313	290	313	0.96
3	11	0.0029	0.18	12.7	5.9	1	23	344	367	344	367	0.97
4	11	0.0058	0.36	11.8	0.3	1	23	371	394	371	394	0.96
5	11	0.014	0.85	10.6	0.0	2	20	412	430	412	432	0.94
6	11	1e-05	0.00064	20.4	0.6	3	23	446	467	445	467	0.97
7	11	0.031	1.9	9.5	4.5	2	23	489	511	489	511	0.97
8	11	0.00038	0.024	15.5	2.5	1	20	522	541	522	544	0.93
9	11	0.0045	0.29	12.1	1.0	1	19	550	568	550	573	0.86
10	11	3.5e-06	0.00022	21.9	1.6	1	23	579	601	579	601	0.98
11	11	0.018	1.1	10.2	0.0	1	23	607	630	607	630	0.93

Sequence Information

Coding Sequence: ATGGATAAATTGACGAACAAAGTCAAGACTCAACAGAAAAAAATCAAGAGGCTAAATGAAAAAATTAGGAGACAAGCTAAGAAGATGAACAATCTGCAATCCATTATAGCAACTTTAAAAGACAGGAACTGTGCCGGAACTGATATGGTTGTGGATGTAGGAACCACATCTGAAGATGAAGGGACCACTCCTGATGATGAGATCAAACCTGACGATGAAGAAACCGCGCTAGATGATGAGATCAAATCTGATGATGAAGAAACCGCGCTTGATGGTGAGATCATGCTTGATGATGAAACCAAACTTGATAATGAAGAGATCGTGCTTGATGATGAGATCAAATCTGATGAGGAAGAAACTGCGCTTGATATTGAGATCATATCTGATGATGAGACCGTGCTTGATGATGATGAGGTTCAAGTTATAGCTGATGATGCAGGAATGGAACTGGGAAAAGTAAACTCAACTGAAGAGGATCAGTCGGATGACGATATGCCTTTATGCTTTATCGTAGTAGCTGATGATcCAACAGAAGACGAATCTGATTCACAATTAGACGCAGAAGAGGAAGTCGAAAAGCGGAAACGTGGGCCGGCGAGAAAGTGTCGTGCTGCAACCGACAAGTCAACAGAACCGAATCCGAAACGGACTAGGATCAGGAAAGCAGTTGACAATGATATTGACTTCAACAAACATGTTTCAGTCATTAAGTTATCGATGGAAGAACAACTGGAGGAATTAAACAAGCGCAAGCAATCATCGAACTATAGGAACTCACCGTACAAGTGCAACCTGTGCTACAGGGGGTTTATACACACGCAGGCGTGGGTACACCATCTCAGGAAACACGATcctAGTTCAGGCGACATAGAGTGTCCCTTATGCAAGATCAGATTCAAAAAGGAGAGCCGGCTGAATCGGCACAACAaaactatacataatataaaatacgtttGCAAGTCTTGTCCACACTTCACGATGAGTGAACCAAAAGCGAGACTACATCAGAAGTGGCACGAGGGTGTCACGTATAAATGTAAACACTGCGATGAAGAATACACaaaacaTTCGTCATATTTAAATCATGTAAGACTCAAACACCCGTCAGATTTCATTTGTGACCTGTGTGGAGACTCGTTTGTCAGTAAAAAAGGACTCTCCATGCATAAGAACAGGATACATAAAGATGTTACTGATGAGGCGAGAGGCGATGATGAAACAGAGCAGGGTGCCTACTGCAAGGAATGTGACATCAAGTTCGTATCGGTGGAGGCGTGGAATCGACACATGGTCATCTCCGACAAGCACAAACAGACCGTGCATTTTGAAAACTTGTGTCGCGTGTGTGGTAAAACGTTCGAGAGTTCAGGAGAGCTGCAGCGCCATCGCCAGAGGGAGCACGCGCCGAAGTCTCTCATCAGCTACGTGAACCCGACGGGGGACACCAATGGAACCTGGCCAGCCAAGTGTCAACATTGTTCAGAACAGTTCTTCAGCAAACGCGAGTATTGGGTTCACTACCGGAAGAAGCATCCCGGTGAAAACTACCCCGTTCAAAGGAACCACGTCTGCGATATTTGTGGAAAACGTTATCCAAGCAACACGCACCTGCAGACCCACAAATGGAAGCACTCAGAGAAAAAGCAGTTCAAATGCGAGCAGTGTGGGAAGGAGTTTTACAGTCCCGGCAAGCTGCGGTTCCACGAGACGTGGACTCACACCGACCTGCGACCGTTCTGCTGTCCCGTCTGCGGCAAGGCGTTCAAGAGCAAGGGCGCACGGGAACGGCATCTCAAGACTCATACGGGTGAGAAGCCGTACGTGTGCGAGATTTGCGGCGCAACGTTTACGGCCGATTGGAACCGCAAGTTGCACGTCAACTCTGTACACTTGAAGCGAAAAATGCCTCGAAAGCGACGTAGGGTGGGGACCGGAATGAAGATTGCCTTGGTGCAGATGTCAGTGGGTGCTGACAAGGCCAAAAACATATCTGAGGCAGTGAAGCAGATACACAAGGCAAAGGAGCAAGGCGCCCAACTTGTTGCATTGCCTGAGTGTTTTAATTCACCTTATGGAACCAaatactTCAACCAGTATGCGGAGGAAGTTCCGTCGGGAGAGACGTCCCGCGCGCTGTCCCTCGCGGCGGCGGAGGCGGGGGTGTGTGTCGTCGGGGGTTCAGTACCCGAGCGGTGCGGGGGGGAACTGTACAACACTTGCACCGTATGGGACGACGCGGGGAAAATGATCGCTCAACACAGAAAGGTGGGGAAATAA
Protein Sequence: MDKLTNKVKTQQKKIKRLNEKIRRQAKKMNNLQSIIATLKDRNCAGTDMVVDVGTTSEDEGTTPDDEIKPDDEETALDDEIKSDDEETALDGEIMLDDETKLDNEEIVLDDEIKSDEEETALDIEIISDDETVLDDDEVQVIADDAGMELGKVNSTEEDQSDDDMPLCFIVVADDPTEDESDSQLDAEEEVEKRKRGPARKCRAATDKSTEPNPKRTRIRKAVDNDIDFNKHVSVIKLSMEEQLEELNKRKQSSNYRNSPYKCNLCYRGFIHTQAWVHHLRKHDPSSGDIECPLCKIRFKKESRLNRHNKTIHNIKYVCKSCPHFTMSEPKARLHQKWHEGVTYKCKHCDEEYTKHSSYLNHVRLKHPSDFICDLCGDSFVSKKGLSMHKNRIHKDVTDEARGDDETEQGAYCKECDIKFVSVEAWNRHMVISDKHKQTVHFENLCRVCGKTFESSGELQRHRQREHAPKSLISYVNPTGDTNGTWPAKCQHCSEQFFSKREYWVHYRKKHPGENYPVQRNHVCDICGKRYPSNTHLQTHKWKHSEKKQFKCEQCGKEFYSPGKLRFHETWTHTDLRPFCCPVCGKAFKSKGARERHLKTHTGEKPYVCEICGATFTADWNRKLHVNSVHLKRKMPRKRRRVGTGMKIALVQMSVGADKAKNISEAVKQIHKAKEQGAQLVALPECFNSPYGTKYFNQYAEEVPSGETSRALSLAAAEAGVCVVGGSVPERCGGELYNTCTVWDDAGKMIAQHRKVGK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00063862;
90% Identity: iTF_00063862;
80% Identity: -