Ajug014851.1
Basic Information
- Insect
- Amorpha juglandis
- Gene Symbol
- -
- Assembly
- GCA_949126905.1
- Location
- OX421382.1:13928270-13939159[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.086 5.4 8.1 7.0 1 23 297 319 297 319 0.98 2 13 0.0022 0.14 13.1 2.2 2 23 327 349 326 349 0.95 3 13 0.26 16 6.6 0.3 1 23 353 375 353 375 0.97 4 13 0.00098 0.062 14.2 4.8 1 23 380 403 380 403 0.98 5 13 0.045 2.8 9.0 0.7 1 23 407 430 407 430 0.93 6 13 0.015 0.93 10.5 0.0 2 20 448 466 448 468 0.94 7 13 5.1e-05 0.0032 18.2 1.4 3 23 482 503 481 503 0.97 8 13 0.3 19 6.4 0.9 2 23 525 547 525 547 0.96 9 13 1.1e-05 0.00072 20.3 0.4 1 23 560 582 560 582 0.99 10 13 7.9e-05 0.005 17.6 2.0 1 23 588 611 588 611 0.91 11 13 0.012 0.77 10.8 1.7 1 23 617 639 617 639 0.97 12 13 6.7e-06 0.00043 21.0 1.1 1 23 645 668 645 668 0.98 13 13 1.9 1.2e+02 3.9 0.6 2 16 737 751 736 752 0.86
Sequence Information
- Coding Sequence
- ATGGATACGAAAATTAAAGCGTGTAGGATATGTTTGATTACAGACGTAAAAATGTACTATATTGATAATGTTTTGGAAGATTACATATCCTTATTGGCAACTGATGATACTTACATACGCTTCCCTAACTACATATGTTATGAGTGTGCATCTCTGTTGGTGAAGTTCATAaaattcagaaaaaaatatattgaggcACAATCGATAATCTCAAATATGCTTAAGGAATGCAGTGagATAAAAGAACAAGATATTAAGGGAATAAACCATTCAAGATTTGCATTGAAATCATGTCTGGGTCATTGGAAATTGTCTCCAATaagttttagtaaaaaaaatataactacagAGATGACAGTGCATAAGGCGACCACACCTGATTATGAGATCAAACCTGAAGTTTATATAAAACCTGATATTGAAGAGAGTGAACCAGATGACGATGATCAAGCCTTAGCTGAAGAGGAAATCGaatttaatattgatatcaAACCTTATATTGAAGAGAATGAACCTAATGATGAGGATCAAGTCATAACAGTTGATGCAGGAGTCAAGTTTGAAAAAGTAGGGACCCCAACTGTAAAGGAGCAGTCGGGGGAAAAGCCTGCTCTTGGATTAAAAGCGAATGGACgaacaaaaaacaaatcaaattcaCAATTAAAAGTAGCAAAGATAATCCAAAAGCGGAAACGAGGGCAGACGAGAAAGCGCAGCGCCGCTCCCAAAACAAACGAGCAGAAACCTAAACGGACAAAGAAAACCAGCAAAATGGTTGAGAACGATATTGACTTAGAAAAATATGTTACTATAATCAAGTTATCGATGGAGGAACAACTGGAAGAACTGGAAAAGCGTAAACAGTCATCCAACTATCTAAACACGCCATTTCAGTGTAACCAATGCTATAGAGGATTTATACACACGCATGCGTGGAAGCACCATCTATTGAAACATGATCCTAGCGCAGGCGAATTAGTGTGTCCAGTATGCAAGTTTAGGTTCAAAAAGAAGAGGTTGCTAAGGGATCATTCCAAGAGAAACCACGAGATGAAATATATTTGCAAGTCATGTCCATACATATCTAGGCGGGAagTACAAGCGAGACTACATCAGAAGTGGCATGACGGTATcacatataaatgtaaacattgCGATGAAGTATGCacaAAGTGGACATCTTACCTAAGTCACGTGAGGATCAAACATCCATCGGAGTTTATTTGTGACGTGTGTGGATGCTCGTTTATTAGTAAACTAGGAGTTGTTttgcacaaaaataaaatgcataaGGGCGTTATTGAGAATGCGGGAGGCGATGGTGAAACAGAGCCGGGTCCGTACTGTAAGGAATGTGACATCAAGTTCGTATCGGTGGAGGCGTGGAATCGACACATGGTCATCTCCGACAAGCACAAACAGACCGTGCATTTTGAAAACTTATGTCGTGTGTGCGGTAAAACGTTCGAGAGTTCTGAAGACCTGCAAGTCCATCACAAGAAGGAGCATGCTCCTAAGCCGCTCAAAAGCTACCCGTATCCCAAGTTCCGTACTACTATGACCTGGCCTGCCAAGTGCGAacatTGTTCAGAAGAGATCTCCAACGCGCGACAATACTGGGGTCACTACCGACAGATGCATCCAAATGAAATTTACCCCCTTAAAAGGAATCACGAGTATGTCTGTGATATTTGCGGAAAGCGTTTTCCAACCAACACGGTCCTAGTATATCACAAGCGAACGCATTCCGAAGAGCGTGAGTTCAAATGTGGCACGTGTGGAAAGGCGTTCCACAATCGCGCCAACCTGCAGACGCACGAGACTCAGACACACTCCGACCTGCGACCCTTCCCCTGCGCGCTCTGTAGCAAAGCGTTCAAGTGCAAGGGCGCACTCAGCAGGCATTCGAGGAGCCACACGGGAGCAAAACCATACACATGTGAACTGTGCGGCAAGTCGTTCAGTCAGTCAAACAGCCGCAAGCTGCACGTACGGACAGTACACCTGAAGCAACCCACGCCGCCTCGAGTGCGACGACGGACGACCAACAGCCGGACACCGCCGACACCTTCGACTTCTGTCGACACCGACACCGACACTCCGCTCGCTGGACACCGCCGACACCTGCGTCTACTGTCGACACCGATCCGACGCTCCGCTCGGCCGCACCCATGGGCGACGGCCGGCCAACAACCGGACACCGCCGACACCTGCAACTACTGTCGACACCGATACCGACACTCCGCTCGGCTGAAACCACTCCGCCTCGAGTGCGGCGACGGGCGGCCAACGGCCGGACACCGCCGTCACCTGCGACTATTGTTGACACCGACACCGAAACTCAGCTCGGCTAAACCCACTTCGCCTCGAGTGAGGCGACGGGCGGCCAACAGCCCAATACCGCCGACACCTGCAACTACTGTCGACACCGACACCGATCTCCGCATGGCTGAACCCACGCTGCCTTGA
- Protein Sequence
- MDTKIKACRICLITDVKMYYIDNVLEDYISLLATDDTYIRFPNYICYECASLLVKFIKFRKKYIEAQSIISNMLKECSEIKEQDIKGINHSRFALKSCLGHWKLSPISFSKKNITTEMTVHKATTPDYEIKPEVYIKPDIEESEPDDDDQALAEEEIEFNIDIKPYIEENEPNDEDQVITVDAGVKFEKVGTPTVKEQSGEKPALGLKANGRTKNKSNSQLKVAKIIQKRKRGQTRKRSAAPKTNEQKPKRTKKTSKMVENDIDLEKYVTIIKLSMEEQLEELEKRKQSSNYLNTPFQCNQCYRGFIHTHAWKHHLLKHDPSAGELVCPVCKFRFKKKRLLRDHSKRNHEMKYICKSCPYISRREVQARLHQKWHDGITYKCKHCDEVCTKWTSYLSHVRIKHPSEFICDVCGCSFISKLGVVLHKNKMHKGVIENAGGDGETEPGPYCKECDIKFVSVEAWNRHMVISDKHKQTVHFENLCRVCGKTFESSEDLQVHHKKEHAPKPLKSYPYPKFRTTMTWPAKCEHCSEEISNARQYWGHYRQMHPNEIYPLKRNHEYVCDICGKRFPTNTVLVYHKRTHSEEREFKCGTCGKAFHNRANLQTHETQTHSDLRPFPCALCSKAFKCKGALSRHSRSHTGAKPYTCELCGKSFSQSNSRKLHVRTVHLKQPTPPRVRRRTTNSRTPPTPSTSVDTDTDTPLAGHRRHLRLLSTPIRRSARPHPWATAGQQPDTADTCNYCRHRYRHSARLKPLRLECGDGRPTAGHRRHLRLLLTPTPKLSSAKPTSPRVRRRAANSPIPPTPATTVDTDTDLRMAEPTLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00063847;
- 90% Identity
- iTF_00063847;
- 80% Identity
- -