Basic Information

Insect: Amorpha juglandis
Gene Symbol: -
Assembly: GCA_949126905.1
Location: OX421365.1:4179254-4183445[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.08 5 8.2 1.2 1 23 31 54 31 54 0.94

2 16 0.14 8.9 7.4 0.2 2 23 81 103 80 103 0.96

3 16 0.009 0.57 11.2 0.6 1 23 151 173 151 173 0.96

4 16 0.0045 0.28 12.1 1.2 1 23 178 201 178 201 0.97

5 16 0.11 7.1 7.7 0.7 2 23 209 231 208 231 0.91

6 16 4.3e-05 0.0027 18.5 0.3 1 23 238 261 238 261 0.97

7 16 0.039 2.4 9.2 1.0 1 23 326 349 326 349 0.96

8 16 3.6 2.3e+02 3.0 0.8 2 23 376 398 375 398 0.93

9 16 0.021 1.3 10.0 3.2 2 23 421 442 420 442 0.97

10 16 0.0042 0.26 12.2 0.0 1 23 446 468 446 468 0.94

11 16 0.0045 0.28 12.1 3.6 1 23 473 496 473 496 0.97

12 16 0.15 9.6 7.3 1.7 1 23 503 526 503 526 0.95

13 16 0.0002 0.013 16.4 1.3 1 23 533 556 533 556 0.96

14 16 5.6e-06 0.00035 21.3 2.8 1 23 562 584 562 584 0.98

15 16 0.00074 0.047 14.6 2.7 1 23 590 612 590 612 0.98

16 16 0.0001 0.0064 17.3 5.2 1 23 618 641 618 641 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.08	5	8.2	1.2	1	23	31	54	31	54	0.94
2	16	0.14	8.9	7.4	0.2	2	23	81	103	80	103	0.96
3	16	0.009	0.57	11.2	0.6	1	23	151	173	151	173	0.96
4	16	0.0045	0.28	12.1	1.2	1	23	178	201	178	201	0.97
5	16	0.11	7.1	7.7	0.7	2	23	209	231	208	231	0.91
6	16	4.3e-05	0.0027	18.5	0.3	1	23	238	261	238	261	0.97
7	16	0.039	2.4	9.2	1.0	1	23	326	349	326	349	0.96
8	16	3.6	2.3e+02	3.0	0.8	2	23	376	398	375	398	0.93
9	16	0.021	1.3	10.0	3.2	2	23	421	442	420	442	0.97
10	16	0.0042	0.26	12.2	0.0	1	23	446	468	446	468	0.94
11	16	0.0045	0.28	12.1	3.6	1	23	473	496	473	496	0.97
12	16	0.15	9.6	7.3	1.7	1	23	503	526	503	526	0.95
13	16	0.0002	0.013	16.4	1.3	1	23	533	556	533	556	0.96
14	16	5.6e-06	0.00035	21.3	2.8	1	23	562	584	562	584	0.98
15	16	0.00074	0.047	14.6	2.7	1	23	590	612	590	612	0.98
16	16	0.0001	0.0064	17.3	5.2	1	23	618	641	618	641	0.98

Sequence Information

Coding Sequence: ATGAAGGAAATTCTAAAACACCGTCACAATATCAAAACTATACTACAATACTCTAACGCGACTCCAATTCACAGCTACGCATCGCAAGGCTATAACTGTTGCTTCTGTTCGGAACCGTTTCTGAAAGCAAGTGATCTCAAAAATCATATTATACAAGATCACGACGATGTAGTAAAACAGTCTTACCTTCAAAAAAGTACCCTGAAAAACTTTTTAGCTCCCCTAGACATCACATCTTTAACTTGTACCTTGTGTGGCCATGGTATAGGGACATTAGAACTTCTTATGGACCACTTAAATCGCATACatgataagaaaatatataaggtAATCAAGAACTATATGATCGTATTCAAATTTGAAGATAACGTGCTTAAATGCGTCTTTTGTTCCCAAATAATCCAATCCTTTAAACGAATGCGAGAACATTTAAACATTCATTATAGGAATTACGTTTGTGACGTCTGTGACGCAGGTTATATCAGACGCAACTGCCTTACAACGCATTCAGGAACGCACAAACATGGTACCTTTAAGTGCGAGCagtgtgaaaaaatatttgatacacTTGCAAAAAAAAAGTCGCATGAGAAAACTGTACATTTGACTTCACATTTGCGGCTGAAATGTGGATTCTGCAATGAGATGTTCAGGAAAAACGAAAGCAAAAGTGAACATTTGGTGAAGGTTCACGGACTCAAGCCGCGCTCATTCAAATGTGGTGCTTGTGATAAAGTGTTTGCATATCCTCGTCAACTAAATATCCACACGAAACGTGACCATTTGATGGAGCGTAAATTTAAATGTGagcaacaaaaacaaaatggatGCAGATATAGGAAAACAGCAGTGAAAAATGAAGATAATGAACATGAAATACCCTCTAAGGGTGAGCTAGATTTACAGCGAtggaatttaaaacaaattctgATGTACTCAAATGCCACGCCGATCCGTCGATACAGTGGTATCGGATATACGTGTTGCTACTGCGACGAGCAGTACCCGGAGGCAGCGCGCCTCAAAGACCACACCCTCAGCTCGCACACTGATGTACTACGGGCTAATTTTATGACCAATATGAGCATATACGAATTCATAGTCAAGTTAGACATCACGGATCTTTGTTGCACAATTTGCAACAgtaatatcgatacatttaagCTTTTGATTGATCACTTGATAAAAATCCACAAAAAGACCATTTACACCAATCTAAAAAGTCGTATTGTACCGATTAGGTTCAACAAAGAAATCCTGCAATGCGATATATGCCTCTGCGAGTTTAACAATTTGAAGCTTTTACTCACGCATATGCACTCACACTATAAAAACTATATATGCGAAGTCTGTGAGTCTGGTTTCATCACCAACAGCTCTCTTAATATTCACGCTGTGATTCACAAGGTTGGCGAATTTCAATGCGACTATTGTACGAAAGTGTTTAAAACTTACACAAGGAAAGTATATCATCAAAGACGTGTGCACACTGATAGAGTTCGCCCTTACAAATGTGGCTACTGTCTGGAGCATTTCAACGattataatacaaggctaacTCATATAAATGAGATTCACGGCATCCATCCGAAGACATTCTCGTGTCTTGCCTGCGATAAGACCTTCACTAAGCAGAAGCGTCTGACTGTTCACATAAACAGGGATCACCTGATGCTCCGTCCTCACCAATGTCCTGAATGTGACAAGTCTTTCTTCACTACTACGATGCTAAAAGATCACATGCTAAAGCATTCTGGGGCGCGGAACTTCGAATGTGGCGTATGTCACAAATGGTATACGATGAAAAAAACTTTAAAGCAGCATATGAGGATCCATGAAAATGATAGGAAGTACAAGTGCGAGCATTGTGGACAAACTTTTGTACAAAAGTGTAGCTGGCGAGGACACATGAGAAACAAACACGGAGAAAATGTTTAG
Protein Sequence: MKEILKHRHNIKTILQYSNATPIHSYASQGYNCCFCSEPFLKASDLKNHIIQDHDDVVKQSYLQKSTLKNFLAPLDITSLTCTLCGHGIGTLELLMDHLNRIHDKKIYKVIKNYMIVFKFEDNVLKCVFCSQIIQSFKRMREHLNIHYRNYVCDVCDAGYIRRNCLTTHSGTHKHGTFKCEQCEKIFDTLAKKKSHEKTVHLTSHLRLKCGFCNEMFRKNESKSEHLVKVHGLKPRSFKCGACDKVFAYPRQLNIHTKRDHLMERKFKCEQQKQNGCRYRKTAVKNEDNEHEIPSKGELDLQRWNLKQILMYSNATPIRRYSGIGYTCCYCDEQYPEAARLKDHTLSSHTDVLRANFMTNMSIYEFIVKLDITDLCCTICNSNIDTFKLLIDHLIKIHKKTIYTNLKSRIVPIRFNKEILQCDICLCEFNNLKLLLTHMHSHYKNYICEVCESGFITNSSLNIHAVIHKVGEFQCDYCTKVFKTYTRKVYHQRRVHTDRVRPYKCGYCLEHFNDYNTRLTHINEIHGIHPKTFSCLACDKTFTKQKRLTVHINRDHLMLRPHQCPECDKSFFTTTMLKDHMLKHSGARNFECGVCHKWYTMKKTLKQHMRIHENDRKYKCEHCGQTFVQKCSWRGHMRNKHGENV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -