Basic Information

Insect: Amorpha juglandis
Gene Symbol: su(Hw)
Assembly: GCA_949126905.1
Location: OX421384.1:5930121-5938105[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00012 0.0076 17.1 2.9 1 23 83 106 83 106 0.96

2 12 0.018 1.2 10.2 0.6 3 23 115 136 114 136 0.96

3 12 1.1e-05 0.00071 20.3 0.3 1 20 141 160 141 162 0.96

4 12 8e-07 5e-05 23.9 0.6 1 23 173 196 173 196 0.97

5 12 0.35 22 6.2 5.0 1 23 204 227 204 227 0.95

6 12 0.00015 0.0094 16.8 0.2 1 23 234 256 234 256 0.98

7 12 0.11 7.2 7.7 0.1 1 23 261 283 261 283 0.96

8 12 2.3e-06 0.00014 22.5 1.3 1 23 289 311 289 311 0.98

9 12 0.00011 0.0071 17.2 0.1 2 23 315 336 315 336 0.97

10 12 0.85 54 5.0 0.1 8 23 354 369 342 369 0.78

11 12 0.002 0.13 13.2 1.3 1 23 375 397 375 397 0.98

12 12 1.2 75 4.5 0.8 3 23 405 427 404 428 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00012	0.0076	17.1	2.9	1	23	83	106	83	106	0.96
2	12	0.018	1.2	10.2	0.6	3	23	115	136	114	136	0.96
3	12	1.1e-05	0.00071	20.3	0.3	1	20	141	160	141	162	0.96
4	12	8e-07	5e-05	23.9	0.6	1	23	173	196	173	196	0.97
5	12	0.35	22	6.2	5.0	1	23	204	227	204	227	0.95
6	12	0.00015	0.0094	16.8	0.2	1	23	234	256	234	256	0.98
7	12	0.11	7.2	7.7	0.1	1	23	261	283	261	283	0.96
8	12	2.3e-06	0.00014	22.5	1.3	1	23	289	311	289	311	0.98
9	12	0.00011	0.0071	17.2	0.1	2	23	315	336	315	336	0.97
10	12	0.85	54	5.0	0.1	8	23	354	369	342	369	0.78
11	12	0.002	0.13	13.2	1.3	1	23	375	397	375	397	0.98
12	12	1.2	75	4.5	0.8	3	23	405	427	404	428	0.81

Sequence Information

Coding Sequence: ATGCCACCTAAGCGCAATAAAATGGTTAGATCAGtaactcataaaaataaatacgcgaAGAGAATTGTAAATTCTAAAGGTAATCCGTTAATAAAGGAAGAAGATAACTCGAAGTCGTCAGATAATGCTGAAACGTCTCCAAATGAAATAtttgatgaagatgaagataaGTTAACTGaggatgttaatttttttaccgAGGTTATTGACGAAACTCGTCTATGCCCGGACGCTAAAAAGcTTGCATTCTACTGTGAAAAGTGTCCAAAAAAGTTTAAGTTCAAAAAGAGTTTTAATGCTCATGTTTTGAAGGAACATTCCGAGTTGCCCACTAGTGTAGCTTGTGATCAGTGCCCTGTTAGGTGCCCTGATAAGCAAACTTTAAAAGAACATATTACAAAAGTTCATGAAAGAGATATATATGAATGCCCCAGCTGCAACAGAACATTTGTTAGACGTTCACATGTGATACGACATATGGCACAAAGTGGTTGTGATGGAAAAAGTGTTGTTACATATCCATGTGAGATTTGTAATTCCACCTTCACGAGAAAAGATAATCTAAGAGTTCATCTAAGATTACAACACATACATAAAGGAACTAACTCCTTCCCTTGCAAACATTGCAATTTTTTGACAAagaacttttctaagttaataGCTCATTGGCACAAGACCCATGCAgAGACACCAAGCGTGTATGAATGTGATCACTGTGGAAAAGCTACAGGCTCCCGTGCGGCTATGACAAAACATTTGGAAATACACGGCGAGAGGAAATTCGCTTGCGTTGTGTGTGGATACACCACATTCACGGTGGAAGTGATGCGCCGGCACGTGCTGACCCACgtagacgagaagccatacaaGTGTAATGTGTGCGGTCGCTCGTACATACAGCGGCTACAGCTTCAGCGACATCAAGAAAAACACACTGGCAATACTTGTGCAGTGTGTGGGGAGGAATTTAACACAAAGGCCAGattGATCATTCATCAGAGAGTTCACAAAGGACTAAAAAAACTTCAATGCCCAATACAAAGTTGTCCATACTCTAAGAAAGAAATCTCCAATGAAATGAATCTAGAGGCGCATTTAAGATCGCATTTGGATGACAAACCGTTCTCGTGCGAGGTGTGCAGCAAGGAGTTCCACCTGGAGGTGAACATGCGGCGGCACCTCGCGACCCACACGCTGGACCGGCCGCGCCGCTGCATGTACTGCGTCACCGCGCGAGCGTACGTGCGCGGCGAACAACTAGTACGTCACGTGCGACGGCACCACGCCTCCATATTCCGCTCGCATCTGCAACACGTGCGGCAGGTGCTGGGCTGCAGCGTCGACGTCGAACGCGTCAAGAAGTCAGAACTCGACTCCATTTTGAATGTCCTGGACGCGGAGTCCGAGCGTATTATGCAAGGCTACGGCGGCTCCGGCGTACTGTACGGCGGCATGCAGGAGAATGAAGATGACACGTATAAGAGTGAAAAGGAGGAAAGCGGACCTTTAATGACGGAAGATGAACTTGTTGAAAATTTGAACAACCTGTTGTCAAAGTTGATCGATAAGGAAACACTGCGGTGCTTTGGTTGGCCTGAAAGGACTGTTGACGTGGTTCTAGAAAAAGTGATTGAACAATGCGGGTGTCAGCCGGCGGACCGGGAAATGTGGACGCGCATGCAGCGTCTGCGAGAAAATGCTAAATATTTGTTCTTGTACGTCATTGAAGACAAGACGATTACCGAAATGCTCGGGAAATACACGATCGATCAAATCATCAAACATATACTTGCACAAGTTACCGAAGATGAAGCTACAAGTTGA
Protein Sequence: MPPKRNKMVRSVTHKNKYAKRIVNSKGNPLIKEEDNSKSSDNAETSPNEIFDEDEDKLTEDVNFFTEVIDETRLCPDAKKLAFYCEKCPKKFKFKKSFNAHVLKEHSELPTSVACDQCPVRCPDKQTLKEHITKVHERDIYECPSCNRTFVRRSHVIRHMAQSGCDGKSVVTYPCEICNSTFTRKDNLRVHLRLQHIHKGTNSFPCKHCNFLTKNFSKLIAHWHKTHAETPSVYECDHCGKATGSRAAMTKHLEIHGERKFACVVCGYTTFTVEVMRRHVLTHVDEKPYKCNVCGRSYIQRLQLQRHQEKHTGNTCAVCGEEFNTKARLIIHQRVHKGLKKLQCPIQSCPYSKKEISNEMNLEAHLRSHLDDKPFSCEVCSKEFHLEVNMRRHLATHTLDRPRRCMYCVTARAYVRGEQLVRHVRRHHASIFRSHLQHVRQVLGCSVDVERVKKSELDSILNVLDAESERIMQGYGGSGVLYGGMQENEDDTYKSEKEESGPLMTEDELVENLNNLLSKLIDKETLRCFGWPERTVDVVLEKVIEQCGCQPADREMWTRMQRLRENAKYLFLYVIEDKTITEMLGKYTIDQIIKHILAQVTEDEATS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00341561;
90% Identity: iTF_01010626;
80% Identity: -