Ajug000329.1
Basic Information
- Insect
- Amorpha juglandis
- Gene Symbol
- ZFX
- Assembly
- GCA_949126905.1
- Location
- OX421365.1:3134752-3139857[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.61 39 5.4 0.0 3 21 90 108 88 109 0.94 2 26 8.1 5.1e+02 1.9 1.5 3 23 115 134 114 134 0.89 3 26 0.091 5.8 8.0 0.2 1 23 139 161 139 161 0.96 4 26 0.00033 0.021 15.7 0.2 1 23 165 187 165 187 0.96 5 26 0.061 3.9 8.5 1.9 3 20 192 209 191 211 0.93 6 26 0.001 0.065 14.1 2.4 1 23 221 244 221 244 0.95 7 26 0.00095 0.06 14.2 1.9 1 23 250 272 250 272 0.98 8 26 0.045 2.8 9.0 3.4 1 23 279 301 279 301 0.98 9 26 0.0017 0.11 13.5 0.2 1 21 316 336 316 337 0.95 10 26 0.047 2.9 8.9 3.0 2 20 446 464 445 466 0.84 11 26 1.3 84 4.3 0.7 3 23 472 492 471 492 0.92 12 26 0.18 12 7.1 2.2 2 23 498 520 497 520 0.88 13 26 0.21 13 6.9 5.9 1 23 525 547 525 547 0.97 14 26 1.6 1e+02 4.1 7.1 1 21 550 570 550 571 0.95 15 26 0.0008 0.05 14.5 0.7 1 23 583 606 583 606 0.95 16 26 1.6e-05 0.001 19.8 1.5 1 23 612 634 612 634 0.98 17 26 5.3 3.3e+02 2.5 0.5 1 23 668 691 668 691 0.87 18 26 0.0087 0.55 11.2 1.2 2 21 817 836 816 837 0.90 19 26 0.0023 0.15 13.0 0.1 3 23 872 893 871 893 0.97 20 26 0.0026 0.17 12.9 0.7 2 19 899 916 898 920 0.88 21 26 0.61 38 5.4 1.6 2 21 924 943 924 944 0.93 22 26 1.1e-06 6.9e-05 23.5 0.4 1 23 970 993 970 993 0.96 23 26 0.00049 0.031 15.1 0.5 1 23 999 1021 999 1021 0.95 24 26 0.12 7.7 7.6 0.1 1 23 1027 1049 1027 1049 0.97 25 26 0.0043 0.27 12.2 0.5 1 23 1055 1078 1055 1078 0.95 26 26 0.00039 0.025 15.4 0.3 2 23 1085 1107 1084 1107 0.94
Sequence Information
- Coding Sequence
- ATGGCGCACATAACAGCCTTCGTGCCATTCCTGCTCCTATGCAGGGAATCCTCCCAGCGGTGGGACCAAATCACAGGAATGTTTGACGACATCCAGCTCCCAAAGAAAGCAAAAAGCTACTACTTCTTAGTCTTGAAAGATATTCGGACTTACTCCAGTACAAAAACAGCGACAAACGAAAAGGAAGCGTTGCagaatataaaatcaaaaatatccAACCGAAATTGTTACAAAAGGTGCCGAAAATGGAATACACCAAAAATGATTTGCCCAGAATGCGAAGGTACATATACAAACATCGTAAAATACAACACTCACATTAAAAACGTGAAGAAGAGAATGTGCGTTCATTGCAACACTTTAGTAGATCTAGATAAATACGAGACACATTTGAGAACTCATTCAGTTACAGTGTTTGCTTGTAACTTATGCCCTGAGGCatttttaagagaaaaatcattGGTTCTTCATAGGTCGAAACACAAAGGAAACCATGTCTGCGTGGAGTGTAGGCAAAGTTTCATTACGTCAGCGAACCTCGCTGCACATTTGGTAAAACACCAGTCAGAAATATGCGTTGGATGCAATAAGAAGTTTAGTAATAGAATATGCTACACAAAACATAAGGGAAGATGCTCTATCGTAGAAAATCTTAAACTATACATCTGCGACTACTGTTCAAAAGAATACAATAAAAGGAGTACTTTAAAATTGCACATCATTCACAATCATTTAACGGGGAAGCAGTTCCAATGTGACAAATGTGGTAGAACTTTCCTGAGCCGCGTACATTTGGCCGAACATAGCAATACCCACAACAAGGTCCTTGATCGATACATATGCTCAACATGTGGCAGCAAATTCAGTACCAGGCGTGGTCACGAGAGACATATAAAGAAGCATGATACTGGTACTTACGAAGTTAAGTCTAAAAAGAGAATTAAATATGTCTGCCCGATCTGTAAGAAAGTTTACTATCAAAAGAAGAGCATTGATAGTCATTTGAGGGTGGGAGAGGAGCCTGCGCTGCCGCAGGGGCTCTGCAGGTCCTGCTCCGAGCAAGCCATGGCGGCATTCCGCTACAGGCAGCTCTGTCTGAACTCCAACCAGCACTGGAGAGACGCAACCGTCTGCCTCGCGCAGATCCACGCACCCGCTGATGACGACAAAACATTCTACGTTCTGTATAACGGGCACATGATAGTTATAAAAGACCAGATCGATCGAGGGTTGAACGAATCAGAGGCTCTGAAAAAACTTAACCACAGGCTTAAAGACCCAGAACCTGATAAGCCGCCGAGGAGGACGAAGCGATCATTCGCGCCGATCAGTTGCTTCTGTTCGGATTGCGGTAAAACCTTCTCAAATACTGAATTTCTGAACTTTCATCTGAAGAACTCGTTGAAACGTGCTTGTCATATGTGCGGCGTTGTAATACCGAAGAAGAATTTGTCTAAGCACTTACAAGATAAACACGACATGACGGTGGTAGAGTGTAGTACATGCCACGGCGTCTTCGATAACCAGCAGCAGTTAGAACAGCACTGTATCACGTATCATGGCCCTGATACATACTCTTGTCACTGCTGCGGTAGTGGCTTCAACAACCATAGAGCTTTGCGTGCCCACATGTACTCCCACACGCTGTTCCATTGCAAGGCTTGTGGAAATAGTTTCGAGAATCGAAAGTGCTACAAGCACCATCAAAAACAGTGCAAGAAAACAGATGAACCGCGACATGAAGTGTACATTTGTGATCActgtaacatagaatataatagaaagCCGTCGCTCCGGATCCATATAATCCAAAAACATCTGAATATTAATCCTTTCGTGTGTCAAGTGTGTGGTAAAAGAGCTTCGACAATGGCGCATCTAAAATCTCATATGAAGACGCATAACGCGGCTCGCAGCGTATTCCAATGCCATTGCGGTGCTAAAATGCGTACCGAGGTCGGATACCAGCTTCACCAACGGATCCACTCGGGTGAGCGGCCTTACGAATGTGACACTTGTGGTGATCGATTTCTGTCGGCGTCGCGACGCCTCGACCACATTAAACGAAGGCATCGCACCGCGGGAGACATGCCACACGCCTGCTACAAGTGCTCTGCGTCCTTCATAAAGGAAGAGTCCCTATGTCCGAACAGCGCATGCGTGTCATGTGCGAGCACAGCGCTAGCCGCGCAGGAATTCCGCTACTTCGTGCAGTCCTCACAAAAGATGTGGGGGAAAGCCATCACCAATCTCTCGGGTCTGCCTAATACAATGTCTTCCCCGCTGAAATCACTATGCGTGCTAGTCACCCCAAATGACATGCGCATACAGACAGTCAAAAACTATGTCAGCGGTGACACTAAAACCATCTTAAATAGGCTCAAAACAGGGATAGGCAGAAAGCCTTTTGGTCGGAAACCTCGAACCGACCGTACGGGTCCGTCATGCACCTGCCCAGACTGCGGGAAGAGCTTCTTAAGCCCTCATTTCCTCAGTCTCCATCTCATGAACAGCGGACAGAAAGAGGCTTGCGTGCTGTGCGGCGACGTTGTGGCTCGCGGCCAGAAAATGAAAGAGCACATGAGCGCAGTACACCGGACTAACCTGCAACTCTGTACTGACTGCCCGTTACTCTTTCCCACCGAGGAGGAGTTGAAGAAACACATCAAACTTAGTCACAAACCAGGTTCTTTAACTTGTAATGAATGTGGCAGGAGTTTTCCTAGAAAAGTGGCGTTCGACCACCACCCTCAGATGCACATGGTGAGAACGTGTCGTAGTTGCGGCGCGCAGTTCACAAATCGAGGATGTTACAGAGAGCACAGGATGCAGTGCGAGCCTGATGCCAAGCCTAGTGTGGACAGTGTACCGCGAGCGCGGCGGTCGAATATCCGGGACCCGGCGACATACACGTGCGACTACTGCGGCAAAACGTACAGCTCGCGGCCTCAGCTTAAAAACCACATCTTATGGATCCATATGGATGTTCGTCCGCACCAGTGTCAATGGTGTGGGAAGCGGTTTTATACCCCGGCACGTCTCGCCGAGCATACTGTCGTACACACGCGTGTAAGGAACTTCGAATGTGACATATGTGGTGCTAAGTTAGTGAGTAAAATGGCCGCCATTTACCACAAGAGGAGGCACACAGGCGAGCGACCTTATAAGTGTGAAGATTGCGGTGAAGGATTCATATCATCGTCGCGAAGATCAGAGCACGCCAAGCGGAAGCACAATAGAGGCTCAAAGCTACAGTGCCAGTACTGTCCAGCCAGCTTTGTGCGGAAACAAGAGCTGGCGAACCATAAAGAGAAGCTGCACATGCCTGAAATGATGTTTGATAATATTGAACGAATTGAAATAAAGAAGAACAATACGCCACGGACGTATTAA
- Protein Sequence
- MAHITAFVPFLLLCRESSQRWDQITGMFDDIQLPKKAKSYYFLVLKDIRTYSSTKTATNEKEALQNIKSKISNRNCYKRCRKWNTPKMICPECEGTYTNIVKYNTHIKNVKKRMCVHCNTLVDLDKYETHLRTHSVTVFACNLCPEAFLREKSLVLHRSKHKGNHVCVECRQSFITSANLAAHLVKHQSEICVGCNKKFSNRICYTKHKGRCSIVENLKLYICDYCSKEYNKRSTLKLHIIHNHLTGKQFQCDKCGRTFLSRVHLAEHSNTHNKVLDRYICSTCGSKFSTRRGHERHIKKHDTGTYEVKSKKRIKYVCPICKKVYYQKKSIDSHLRVGEEPALPQGLCRSCSEQAMAAFRYRQLCLNSNQHWRDATVCLAQIHAPADDDKTFYVLYNGHMIVIKDQIDRGLNESEALKKLNHRLKDPEPDKPPRRTKRSFAPISCFCSDCGKTFSNTEFLNFHLKNSLKRACHMCGVVIPKKNLSKHLQDKHDMTVVECSTCHGVFDNQQQLEQHCITYHGPDTYSCHCCGSGFNNHRALRAHMYSHTLFHCKACGNSFENRKCYKHHQKQCKKTDEPRHEVYICDHCNIEYNRKPSLRIHIIQKHLNINPFVCQVCGKRASTMAHLKSHMKTHNAARSVFQCHCGAKMRTEVGYQLHQRIHSGERPYECDTCGDRFLSASRRLDHIKRRHRTAGDMPHACYKCSASFIKEESLCPNSACVSCASTALAAQEFRYFVQSSQKMWGKAITNLSGLPNTMSSPLKSLCVLVTPNDMRIQTVKNYVSGDTKTILNRLKTGIGRKPFGRKPRTDRTGPSCTCPDCGKSFLSPHFLSLHLMNSGQKEACVLCGDVVARGQKMKEHMSAVHRTNLQLCTDCPLLFPTEEELKKHIKLSHKPGSLTCNECGRSFPRKVAFDHHPQMHMVRTCRSCGAQFTNRGCYREHRMQCEPDAKPSVDSVPRARRSNIRDPATYTCDYCGKTYSSRPQLKNHILWIHMDVRPHQCQWCGKRFYTPARLAEHTVVHTRVRNFECDICGAKLVSKMAAIYHKRRHTGERPYKCEDCGEGFISSSRRSEHAKRKHNRGSKLQCQYCPASFVRKQELANHKEKLHMPEMMFDNIERIEIKKNNTPRTY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -