Basic Information

Insect: Amorpha juglandis
Gene Symbol: -
Assembly: GCA_949126905.1
Location: OX421373.1:5925644-5928740[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.94 59 4.8 0.3 6 21 212 227 210 228 0.93

2 12 0.018 1.2 10.2 0.3 3 23 255 275 253 275 0.96

3 12 0.00081 0.051 14.5 4.0 1 23 284 306 284 306 0.98

4 12 0.00011 0.0072 17.1 4.0 1 23 314 337 314 337 0.96

5 12 0.00027 0.017 16.0 1.0 1 23 342 364 342 364 0.98

6 12 0.00015 0.0092 16.8 6.5 1 23 370 392 370 392 0.98

7 12 9.5e-08 6e-06 26.8 0.8 1 23 398 420 398 420 0.96

8 12 2.5e-07 1.6e-05 25.5 0.4 1 23 426 448 426 448 0.99

9 12 1.1e-06 6.8e-05 23.5 0.3 1 23 454 476 454 476 0.98

10 12 3.4e-05 0.0022 18.8 0.5 1 23 482 504 482 504 0.98

11 12 3e-05 0.0019 19.0 2.1 1 21 510 530 510 532 0.96

12 12 2.3e-06 0.00015 22.5 0.2 1 23 538 560 538 560 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.94	59	4.8	0.3	6	21	212	227	210	228	0.93
2	12	0.018	1.2	10.2	0.3	3	23	255	275	253	275	0.96
3	12	0.00081	0.051	14.5	4.0	1	23	284	306	284	306	0.98
4	12	0.00011	0.0072	17.1	4.0	1	23	314	337	314	337	0.96
5	12	0.00027	0.017	16.0	1.0	1	23	342	364	342	364	0.98
6	12	0.00015	0.0092	16.8	6.5	1	23	370	392	370	392	0.98
7	12	9.5e-08	6e-06	26.8	0.8	1	23	398	420	398	420	0.96
8	12	2.5e-07	1.6e-05	25.5	0.4	1	23	426	448	426	448	0.99
9	12	1.1e-06	6.8e-05	23.5	0.3	1	23	454	476	454	476	0.98
10	12	3.4e-05	0.0022	18.8	0.5	1	23	482	504	482	504	0.98
11	12	3e-05	0.0019	19.0	2.1	1	21	510	530	510	532	0.96
12	12	2.3e-06	0.00015	22.5	0.2	1	23	538	560	538	560	0.98

Sequence Information

Coding Sequence: ATGGAAATAACAGTCGATATATTTGGAAAGATATGTCGCGCCTGCCTCAGCGAATCTTCGAATATGAAATCATTGTTTATGAACATAGACGGCGAAGATCGGAATCTTTTGGACATTCTAAGAAACATAACTAATGTGAATATTAAAAGTGATGATAAACTACCGAAACTGGTTTGCAACGAGTGCGAGGTAATCATGTGCAAGGCTGACGCTTTCAAACGTCGATGCCTTCAATCTGAGACCATATTAAAAAACGTAACTAGGGAATCTGACTCGAACTTTGCAAGCGAGGAagacgataaaaaaatactgataaaaGTTGAAAAGAATGACAGTATATTGAAAAGTTTACTAGACATGCCATCGAATCCCTTAAATGGTAACACTAGTGAATATAtagatattaaaatacctaatttaCCAGATGTAAGTTGTAGTGATGATTATGATGAGAGTTTTGACAAAGCTATGGACTGCGATGAAGTGttacaaatagaaaataatgttaaagAAGAAGCTAGGGAAGAATATCAACATAATGATGACAATAGCGTTACGAATGAGCCACCATCATTAACTGTCTTACCCATAGAGTACAGCAAGTCTAAATCGGAAGACAAATACTCATGTCGCTGTGGACTGAACTTTATgaataaagagaaatataaAGTGCATCTCAAAGTGTTCAACTGTAACAAATTCAACAAATTATTTAAGAAAATTACTGATTCCAATGGCATacgaataaaaaatcaaatagcATGCCAGAAGTGTAATGGTCAATTCAGCACAGTTTCAGCATGGAATGCACACCAACATGTCCACAGAGACGAGAAAACTGTACAACCATTTCAATGTGCCATTTGTTTAAGTAAGTTTAAGCACCGCAAGACTTTAGTCAGACATATGAGGCAGCATAATGAACCAAATACTGTCAAATTTCACTGTGATAAGTGTAAAAGAGAGTTTAAGTATAAAGCTCATTTAGAGAATCATATAATTTCAGTACATTCTCAAAACGGATTTACATGTGATTATTGTATGCAGAGTTTCAATGATAAGGACAGCTTGGAGGTTCATAGAGACAAGCATAAAACAGACAAGAAACATCAATGTGAGATTtgcaaaaaaacattttatatgttATGTACATTAAAAGATCACATGAGGACTCACACAGGTGAAAAGCCATTCTTATGTTCAGTGTGTGGTAAGGGTTTTAGTCAGAAGACTAACTTGGCACAGCATATGCGGAGACATCAAGGGTTGAAACCATTTAAGTGTGAAAATTGTGATAAACGATTTGTGTCTAAAGGCGAGTTGGAGGCGCACGCGCGCACTCACAGCGGCGCTCACCCGTTCGTATGTGACGAGTGTGGCAATGGCTTTACTACATCAAGCTCTCTGGTCAAGCATCGGAGGATACACActgGAGAGCGTCCTTACATCTGTGACTTGTGCCCAATGCGCTTCACAGCCTCGGGGACATTGAAGAACCATCGCAGGACTCACACAGGAGAGAGGCCTTACCAGTGTTCATACTGTGAGAAAGCTTTTGTGCAGCGCAACGATCTCATCTCCCACATTCGCTGTCATACTGGCGAGCGTCCGTTCGTGTGTACGCTTTGTGGCCAGAGTTTCCGCAAGGCGTCGGGCTTGAAGGCGCATGGCCGTGTGCACGGGACCACGTCaggactgcgacaggacatacGCCAGGACATGCGCCAGGAAATGAGTCAGGACTTAATGTTGAATGTACATTGTGAGCCCACGCACTGA
Protein Sequence: MEITVDIFGKICRACLSESSNMKSLFMNIDGEDRNLLDILRNITNVNIKSDDKLPKLVCNECEVIMCKADAFKRRCLQSETILKNVTRESDSNFASEEDDKKILIKVEKNDSILKSLLDMPSNPLNGNTSEYIDIKIPNLPDVSCSDDYDESFDKAMDCDEVLQIENNVKEEAREEYQHNDDNSVTNEPPSLTVLPIEYSKSKSEDKYSCRCGLNFMNKEKYKVHLKVFNCNKFNKLFKKITDSNGIRIKNQIACQKCNGQFSTVSAWNAHQHVHRDEKTVQPFQCAICLSKFKHRKTLVRHMRQHNEPNTVKFHCDKCKREFKYKAHLENHIISVHSQNGFTCDYCMQSFNDKDSLEVHRDKHKTDKKHQCEICKKTFYMLCTLKDHMRTHTGEKPFLCSVCGKGFSQKTNLAQHMRRHQGLKPFKCENCDKRFVSKGELEAHARTHSGAHPFVCDECGNGFTTSSSLVKHRRIHTGERPYICDLCPMRFTASGTLKNHRRTHTGERPYQCSYCEKAFVQRNDLISHIRCHTGERPFVCTLCGQSFRKASGLKAHGRVHGTTSGLRQDIRQDMRQEMSQDLMLNVHCEPTH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00341531;
90% Identity: -
80% Identity: -