Ajug016724.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Amorpha juglandis
Gene Symbol
-
Assembly
GCA_949126905.1
Location
OX421385.1:4748337-4767029[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 5.9e-05 0.0037 18.0 7.9 1 23 189 211 189 211 0.98
2 13 2.6e-06 0.00016 22.3 0.2 3 23 225 245 224 245 0.98
3 13 6.9e-05 0.0044 17.8 2.3 2 23 254 275 254 275 0.98
4 13 0.00015 0.0095 16.8 1.9 1 23 281 303 281 303 0.98
5 13 3.7e-05 0.0023 18.7 3.1 1 23 309 331 309 331 0.97
6 13 1.8e-05 0.0012 19.6 8.4 2 23 338 359 337 359 0.97
7 13 2.4e-05 0.0015 19.3 0.8 1 23 365 387 365 387 0.98
8 13 8.5e-06 0.00053 20.7 1.2 1 23 393 415 393 415 0.99
9 13 0.00036 0.023 15.6 1.1 1 23 421 443 421 443 0.98
10 13 0.0018 0.12 13.4 2.0 1 23 449 471 449 471 0.97
11 13 1.8e-06 0.00011 22.8 0.5 1 23 477 499 477 499 0.98
12 13 5.1e-06 0.00032 21.4 1.1 1 23 505 527 505 527 0.99
13 13 0.00042 0.026 15.4 3.1 1 23 605 627 605 627 0.99

Sequence Information

Coding Sequence
ATGGCTGCTGTTAATAAAATGCAACATTTGAAGTTCGACAAAATATGCCGAGCttgtatgcaaataaaaaaggacATGAGACCCTTGTTCGAGCAGCTGACTGCTACTATGTTGATGGGGATATCAAAAGTGCAGGTGGCGGTAGGTGATGGTCTTCCATCACAGTTGTGCCTGCAATGCGTGCATCAGATATCGCGGTGTCACGCATTCAAGGAGCTAGTGGAGCGGAATGACGTCACGCTGCGGGAACACGCAAAGTTCCTCTCACAGGAAGCCATCAAAAGGGAACAGGAGGAAAAAGAGAAGATGTTGTCAATGGATCCGACATACATGCAGTATATGGAAGTGCCTATAACAAACCCAAACCAGATACTCGAAGGGTTCTTCGCAACTCCAGAACAGTCGCAGAACTCCGACGAGTCTACGGTTAAGGATAACTTTGAAAATGATAAGTCAGAACAAGCAATAGCCACGAACAAAGATAATGAAGGAATGAACTCTGATGAGGAGAAGTACCTACAGTTGGTAGTATTTCAAGCGACGTCGACGGTATCTCCCGGCCGCCATGTTTGTAACCTCTGCCACAAGGAGTTCAAGCATTCGCGCTGGTTGAAGCAGCACATGAGGTCTCACTCCAACTGGATTAAAGCTAATTGCAAGAAGCCGCCTATGTGCCCGATATGCGAGAGGACTTTTAAGGGTCCAGGAATGTTAAAAATGCACATGAGAACACACGAGCAGCGGCCACCAAAACAGCCGACCTGCTCAGTATGCCAAAGGACATTCCCCACAAAGACGATGCTGTACCGTCACCGTCAAACCCATTTCGAACAGAAGACACACCAGTGCACTGTATGTGAAAAGAGATTCTATAGTGGGTATGCGTTGAGGTCCCACATGGCGAGACATCGAGGCGAACGACCCTACATATGCTCCACTTGCCACAAAAGCTTTTACAACCCTACAGATTTGAAGGTACACTTCCGTCTCCACACAGGCGAGAAGCCGTTGAAATGTTCAGAGTGTAACAAGACGTTCAGGCGACATTCAACACTGTGCCAGCATATGAAGAAGCACCGCGGCATACGGAACCACGTGTGTACCGTGTGCAATAAAGGGTTCTACGAGGTGTCCAAACTGAACGCGCATATGAGAGTGCATACCGGTGAGCGTCCTTACGAGTGCCAGTTCTGCGAGCGTCGTTTCGCTCAACAGTCCGCACTGATCTACCATCGACGCACGCACACCGGCGAGAAACCGTACAGCTGCAAGCTCTGCTCCGCCAGGTTCACCACCTCCTCCGCCAGGAACAACCATATGGTCACCCACACCGGCAACAAGAGGTTCGTGTGTCCAGTATGCTTCAAAGGCTGTACGTCCCGCACTGAGTTGCGCGTGCACTCGAGCAAGCACACCGGCGAGAAGTTGTTCGAGTGCACTGTGTGTGGACAGAGGTTCAGTTCCGCGTCGTATCTCGCTGTACACCGTCGGTACCACACCGGGGAACGGAAATATCAGTGTCAAGTCTGCGGGAAGGGATACATAGAATCGAGTTCATACAAAAAACATCTGAAGACACACGAGGTGAAATCGGAAACTGAGTCTTCGACGAACTCTGAGAACAGTGGTGAAAATCAAATGAACAACGCGAAAATGGACGCGCCGAATGTAGTACCGGAACCGCTGGCCATCGTGACCGAGGACCAAGTCGAGCCGCAGAACCAAGTGTCGCTACAAAGTGAAGCGCAAGACGTACAGTCGGTGGTGACACAAGGTGAAGCGCAGACGGACAGTCCGCCGCCGCAGCGACGTTACAAATGTGGACTCTGCGTCAAGACTTACATGTACCTGCACAGTCTCAAGAAACATATGATTACACATGTACAGCAGCAGCAAGTTCAGCAGCAAACACAAGTACAACAGCAACAGTTGCAGCAACAACAGGTGCAACAGCAACAGGTGCAACAAGTCCAGCAGGTTCAGCAACAGCAACACATGCAACATCACCAGCAACAGTTGCAGCAACAGCAGGCCGTGTTGCAAGTGGGCAGCGTGCAACAACTAGCCGTGCCGATACACGCGCATCACGTGCAACAAGGACTTGTGCAGACGGGCCAGCACTCGTACCCGGTGATATCGTCGGTGCAGTCGCTACAGTTGCAACAAACGCAACAGCAACAGCCGCAGCAATTGCAACTTCAAACGATACAAATACATCCGCAGCATCAACCAATACAGATTCATGCGGTAGGCGTCCAACAAGTTCAACAACAGCAGCTACATGTAGCCACGTCGACGTGCCAGACCATGTTACCGAACATTTTGCAGCTGCAGCCAGCGACGGTGGCGGTTTCAGGCCTGGGCCAGCAGGAGCTGGGCGGAGTGGCGCATCGCATCATACTGCAACAACCGCCCACGCACCCGCACGTCTACATACACCACTGA
Protein Sequence
MAAVNKMQHLKFDKICRACMQIKKDMRPLFEQLTATMLMGISKVQVAVGDGLPSQLCLQCVHQISRCHAFKELVERNDVTLREHAKFLSQEAIKREQEEKEKMLSMDPTYMQYMEVPITNPNQILEGFFATPEQSQNSDESTVKDNFENDKSEQAIATNKDNEGMNSDEEKYLQLVVFQATSTVSPGRHVCNLCHKEFKHSRWLKQHMRSHSNWIKANCKKPPMCPICERTFKGPGMLKMHMRTHEQRPPKQPTCSVCQRTFPTKTMLYRHRQTHFEQKTHQCTVCEKRFYSGYALRSHMARHRGERPYICSTCHKSFYNPTDLKVHFRLHTGEKPLKCSECNKTFRRHSTLCQHMKKHRGIRNHVCTVCNKGFYEVSKLNAHMRVHTGERPYECQFCERRFAQQSALIYHRRTHTGEKPYSCKLCSARFTTSSARNNHMVTHTGNKRFVCPVCFKGCTSRTELRVHSSKHTGEKLFECTVCGQRFSSASYLAVHRRYHTGERKYQCQVCGKGYIESSSYKKHLKTHEVKSETESSTNSENSGENQMNNAKMDAPNVVPEPLAIVTEDQVEPQNQVSLQSEAQDVQSVVTQGEAQTDSPPPQRRYKCGLCVKTYMYLHSLKKHMITHVQQQQVQQQTQVQQQQLQQQQVQQQQVQQVQQVQQQQHMQHHQQQLQQQQAVLQVGSVQQLAVPIHAHHVQQGLVQTGQHSYPVISSVQSLQLQQTQQQQPQQLQLQTIQIHPQHQPIQIHAVGVQQVQQQQLHVATSTCQTMLPNILQLQPATVAVSGLGQQELGGVAHRIILQQPPTHPHVYIHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00290899;
90% Identity
-
80% Identity
-