Ajug000427.1
Basic Information
- Insect
- Amorpha juglandis
- Gene Symbol
- -
- Assembly
- GCA_949126905.1
- Location
- OX421365.1:4306685-4310309[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0015 0.094 13.6 0.3 1 23 5 28 5 28 0.90 2 18 0.12 7.5 7.6 0.1 3 21 58 76 57 79 0.89 3 18 0.0023 0.14 13.0 2.3 1 23 101 123 101 123 0.98 4 18 0.00097 0.061 14.2 0.2 1 23 127 149 127 149 0.95 5 18 0.00099 0.063 14.2 0.2 1 23 154 177 154 177 0.95 6 18 0.0038 0.24 12.4 5.6 1 23 183 206 183 206 0.96 7 18 3.4e-05 0.0022 18.8 0.2 1 23 213 236 213 236 0.98 8 18 5.2e-06 0.00033 21.4 1.0 1 23 242 264 242 264 0.96 9 18 3.7e-07 2.3e-05 25.0 1.3 1 23 270 292 270 292 0.99 10 18 0.00036 0.022 15.6 7.0 1 23 298 320 298 321 0.95 11 18 0.42 26 5.9 0.2 3 23 480 501 478 501 0.94 12 18 0.13 8.4 7.5 0.0 1 23 525 547 525 547 0.96 13 18 0.00057 0.036 14.9 0.2 1 23 551 573 551 573 0.98 14 18 0.00017 0.011 16.6 0.3 1 23 578 601 578 601 0.96 15 18 0.013 0.81 10.7 0.6 2 23 608 630 608 630 0.93 16 18 0.15 9.7 7.3 5.7 1 23 637 660 637 660 0.95 17 18 8.6e-05 0.0054 17.5 4.9 2 23 667 688 666 688 0.96 18 18 0.0043 0.27 12.2 4.9 1 23 694 716 694 716 0.98
Sequence Information
- Coding Sequence
- ATGAAGAACCTTTATATTTGTTTCTACTGTGAACAGAATTATTCCGATCCGTCCAGTCTCAGAGAACACAACTTGTTAGAGCATAGTAGTTTAAAAGGACTACAGATAAAACATGCTCTGTCTAAATTAAAGAAGTATGAATTAATAAAAGTAGATGTCACTAATGTCGATTGTAAAATTTGTAATGAAAGTATAGAAGATTTAAATAGCCTTAAAGTGCATTTAGTGGATAAACACAAAAAGGGCATTGATTTGAAAATTAGTGACGGCGTTCTTCCTTTCAAGGTGAAGCTTACAGACTTCCGGTGTGCAATTTGTAAAGAGAAATACGACGAATTCAAATCTCTCAATCATCACATGAACGTGCATTTCCAAAACTTTATATGCGAGCAATGCGGCACCGGCTTCGTAACTCCGGAACGGTTGAGGACACACGCATTTTCGCATGAGACGGGATCGTTTCCTTGCGATGGCTGCGATAAAGTATTTCGATCTACGAATGCTAAGAACGAACATTATGCAACAGTACATTTGAAAGTGAAGCGGCACCGCTGTCCTCATTGCACTGAGACATTCAGAAACTATTTTCAAAGGAACAAACACATATCATCAATCCACGGGTTGAAATTGAAAGAGTTCAAATGCACCATGTGTCCCAAAGTGTTCAGTTTAAGCGGGAAACTTGGAGTGCACGTGCGAACTGTACACTTAAAGATGAAGAGGCACGCATGCGACGTTTGCGATTGGAAGTTTTATTCCAAATCAGAGTTGAAAGAGCATATGATAAGGCACGGAGGGGAAAGGAAGTATCAATGTACTGTATGCAAGAAAGCGTATGCTAGGAAGTACACTCTGCGAGAGCACATGAGAATACATGAAAACGACAGGCGATTCGTATGCACCATGTGCGGTCGTTCATTCGTTCAGAATTGCAGTCTTAAGCATCACAATAAGATACACCATCCTCAAGCTGGACACGGGATGAAAAGAACATCATTATTAAGGTGTAAGAAGATCGTGCCGTTGTTTCAAGTAGCATATGACTGGACTCTGTGTAGACCGCTCGGAACTATAATGGATTTCGGAAAGTTACCTTCAAAACGGCCTCCGACGCCAGACACGCCTCGCAGTGCTTCCCCGCTGCCCGAGAGCAGGCCACCGACGCCACAACAAACAACACTCCAGATCTACAGACCTCTGACATTAAAGAAAGTACCAGATATACGACAAAACGCGTTGATAATATTCGAATTCTCAACAGCTTATCCATTTGTGTATGGAAACAATAAATTCAAATGCTTTATTTGCTCACAGCCCTACTTAGATATGACTATATTGAAACAGCATATGCACGAAACTCATACATTCGCCTCATTAAAAAGACTGGTTAATAACCGTAGAGAAAACATATTGAAAGTAGATGTTAATGATATGAACTGTAAACTATGTCCCGCTAAGCCTAAAGATTTGGTAGAGCTAAAGACACATCTCAAAACAGCACACAAGAAACCAGTGGATCCGGAACTTCATGATAATTTGATACCGTTTAAATTAAACTCGGCTAATGGACCGTACGAGTGTGTGGTCTGTCAGGAGTCTTTTATTAAAGTGAGGATATTGGTCATTCACATGAgtgtacattttaataattacagcTGCGAAGTGTGCGGCTCTGGGTTTATGACTCTGCGTCTCCTGAAGAAGCACTTGGAAGTTCATGAAACAGGAAACTATCCATGTGACCGATGCGAGAAAGTCTTCAGTACTCCGTATAAACGAACACTACATATTCGTGGAGTACATTTAAAACAGTTTCCGCGAAGATGTCCTTTTTGCCCTGAGAGATTTAATTCTAACTACAAAAGGACTATTCATCTACAAGACGTCCATAATCAGTCAACCAGAGTCCATATTTGTCAAACATGTGGCAGAGGGTTTAATTTGAAGTACCATTTGATCTGCCACACCCGCTCCGTTCACATGCAAGAGAGGAATCAGCAGTGTGATGTGTGTCATCAAAGATTTTGCAACAAAGAGACTTTAAAACGGCATATGGTGATCCATACGGGAGAGAAGAATCATAAGTGTCATGTGTGCAGTATGGCTTTTTTGAGAAGAAAGAACTTGAAAGATCATTTAAGATTACATGATTAA
- Protein Sequence
- MKNLYICFYCEQNYSDPSSLREHNLLEHSSLKGLQIKHALSKLKKYELIKVDVTNVDCKICNESIEDLNSLKVHLVDKHKKGIDLKISDGVLPFKVKLTDFRCAICKEKYDEFKSLNHHMNVHFQNFICEQCGTGFVTPERLRTHAFSHETGSFPCDGCDKVFRSTNAKNEHYATVHLKVKRHRCPHCTETFRNYFQRNKHISSIHGLKLKEFKCTMCPKVFSLSGKLGVHVRTVHLKMKRHACDVCDWKFYSKSELKEHMIRHGGERKYQCTVCKKAYARKYTLREHMRIHENDRRFVCTMCGRSFVQNCSLKHHNKIHHPQAGHGMKRTSLLRCKKIVPLFQVAYDWTLCRPLGTIMDFGKLPSKRPPTPDTPRSASPLPESRPPTPQQTTLQIYRPLTLKKVPDIRQNALIIFEFSTAYPFVYGNNKFKCFICSQPYLDMTILKQHMHETHTFASLKRLVNNRRENILKVDVNDMNCKLCPAKPKDLVELKTHLKTAHKKPVDPELHDNLIPFKLNSANGPYECVVCQESFIKVRILVIHMSVHFNNYSCEVCGSGFMTLRLLKKHLEVHETGNYPCDRCEKVFSTPYKRTLHIRGVHLKQFPRRCPFCPERFNSNYKRTIHLQDVHNQSTRVHICQTCGRGFNLKYHLICHTRSVHMQERNQQCDVCHQRFCNKETLKRHMVIHTGEKNHKCHVCSMAFLRRKNLKDHLRLHD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -