Ajug021426.1
Basic Information
- Insect
- Amorpha juglandis
- Gene Symbol
- Bcl11a
- Assembly
- GCA_949126905.1
- Location
- OX421393.1:6829954-6838020[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.9e-07 2.4e-05 24.9 0.5 1 23 191 213 191 213 0.98 2 13 3.3e-06 0.00021 22.0 1.0 1 23 248 270 248 270 0.98 3 13 4.1e-06 0.00026 21.7 1.5 1 23 275 297 275 297 0.98 4 13 1.7e-05 0.0011 19.7 2.9 1 23 303 325 303 325 0.98 5 13 6.8e-07 4.3e-05 24.1 1.0 1 23 331 354 331 354 0.96 6 13 3.2e-05 0.002 18.9 2.5 1 23 360 382 360 382 0.97 7 13 1.8e-05 0.0011 19.7 0.8 1 23 388 410 388 410 0.98 8 13 3.5e-05 0.0022 18.8 2.3 1 23 416 438 416 438 0.99 9 13 2.7e-08 1.7e-06 28.6 0.7 1 23 444 466 444 466 0.99 10 13 1.1e-06 6.8e-05 23.5 0.8 1 23 472 494 472 494 0.98 11 13 0.15 9.3 7.3 3.1 1 23 500 519 500 519 0.94 12 13 2.2e-07 1.4e-05 25.7 0.7 1 23 525 547 525 547 0.98 13 13 0.0003 0.019 15.8 3.6 1 23 553 575 553 575 0.98
Sequence Information
- Coding Sequence
- atgtCGGAAGTGTGGAGCCCTGCCGGCTTGTGTCGATGTTGTCATGCGGAGGGCAATTTTAGGAGCCTCGGAGTACCTTACGCTTTGGAAGGCATCGAAGAAGTATTTTCAGAGATGCTGAGAGAAACCTTCAATATTATCatCAATCCATCTGGAGATTTGTCAACCATGTACAGTATATGCGGTGCATGTGAGCCAAGATTAAGAGACGCAGCTCAGTTCAAAAGACAAGTTATTGCCTGTGAACAGAAGTTTCACCAATACACTGGTTTTAaagATGTTAGCTTATACGAAAAAGATGTTAAACTTGAATTGGAATGTTCTGgagGTGTAAAAGAAGAATCACAAAGTAGTAATCGACGGGATATTTTCAACAAATATGAAGATGTGAAACTACCCACAGTGGATGTGTATATAGAACCAGACGTGGACGTGGAAGACCAGCCGTTGTCCTTACTCCGTGCCAGGAGTCAGGATGATGAGGACACAGGAGCTGATCTGTGGACACCAGCACCGGATCccagtgatgACGAGGATTCAAAACCTCTGAGACAgacaaaagttaaaaaatacTCATGTGAAGTGTGCCAGAAGAAGTTCTCATATAACGGATCACTGGAGATCCACATGAGGATCCACAGTGGCGAGAAAAACTACAAATGCCACCTATGTAACACTCTACACTTGAATAACAAAGAACTCACACGGCACATAGAAGAAAATCATTCCCAAAATGGAGCCTACCCTTGCACCATATGCAATAGAAGTTTCGAGAAGGCGAGATTATTGAAAAAACACCTTTCAACGCATTTCGTGCAGAATTTCTCGTGTGAAATATGTTCCAAAGTGTTTCAACGGAAGAAAGGGTTGAAGGAGCATTTGAAAACACATTCGGGCGAGAAGAAATTCACTTGCACTATATGCAATAAGGCCTTTGGCCACAATCAAACGCTGAAATCCCATATATACACTCATACTGGGGAAAGGCCGTATGTTTGTGACGTGTGTGGACGCAGATTCCCACAAAGGACACATTTGAAACGTcacatatacataatacataaccAAATTAAACCCCACTCGTGTAATGTGTGCCAGAAACAATTCTCCAGCAAGAGTTATTTGGCCATACACGAAAGGCAGCATACTGGAGAGCGGCCATATTCCTGCGACGTGTGTAAAAAAGATTTCACAGCGTACACCACACTTAAAGTCCACATGAGAGTCCATACTGGCATCAAGCCATATAGATGCAATTTCTGTGACCGGCAATTCGCGCAAATGGCTAGTTTTAAACTCCATCAGAGAACACACACGGGCGAAAGGCCATACCAGTGTAAGATATGCAAAAAACCCTTTTCAGACAACGGATATTTAAAGATACACATGAGAGTACATTCTGGGGAGAGACCTTACAGTTGTGAAGTTTGTAAGCGGGCTTTTCGTGAGACCGGACAACTAAAACGGCATATGAGAGTCCATACTGGCATAAAACCTTACACGTGTAAGGTCTGTAATAAGCAGATTGGTAATTTATCCAAGCATATGCGAGTTCACTCTGATGAAAGGCCTTACAATtgtaatatatgtaataaacagTTTTCTGTGAACGGCAATTTGAAGCTACACATGAGAATACATTCCGGAGATAGGCCTTTTACTTGTGAGTTGTGTAGTGGTCAGTTTACACAGAGCAGTGGTTTGAAGCGACATAGATGTACACATAAGAATGACGGGCAGTAA
- Protein Sequence
- MSEVWSPAGLCRCCHAEGNFRSLGVPYALEGIEEVFSEMLRETFNIIINPSGDLSTMYSICGACEPRLRDAAQFKRQVIACEQKFHQYTGFKDVSLYEKDVKLELECSGGVKEESQSSNRRDIFNKYEDVKLPTVDVYIEPDVDVEDQPLSLLRARSQDDEDTGADLWTPAPDPSDDEDSKPLRQTKVKKYSCEVCQKKFSYNGSLEIHMRIHSGEKNYKCHLCNTLHLNNKELTRHIEENHSQNGAYPCTICNRSFEKARLLKKHLSTHFVQNFSCEICSKVFQRKKGLKEHLKTHSGEKKFTCTICNKAFGHNQTLKSHIYTHTGERPYVCDVCGRRFPQRTHLKRHIYIIHNQIKPHSCNVCQKQFSSKSYLAIHERQHTGERPYSCDVCKKDFTAYTTLKVHMRVHTGIKPYRCNFCDRQFAQMASFKLHQRTHTGERPYQCKICKKPFSDNGYLKIHMRVHSGERPYSCEVCKRAFRETGQLKRHMRVHTGIKPYTCKVCNKQIGNLSKHMRVHSDERPYNCNICNKQFSVNGNLKLHMRIHSGDRPFTCELCSGQFTQSSGLKRHRCTHKNDGQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01010597;
- 90% Identity
- -
- 80% Identity
- -