Ajug006359.1
Basic Information
- Insect
- Amorpha juglandis
- Gene Symbol
- -
- Assembly
- GCA_949126905.1
- Location
- OX421371.1:8798513-8799268[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.4e-07 0.00038 20.5 0.0 3 39 18 53 16 58 0.89 2 2 3.3 2.4e+03 -1.2 0.0 12 22 134 145 132 146 0.63
Sequence Information
- Coding Sequence
- ATGTCGGGAACTCGGAGAAGGAGCCAAGGATTGAAAGTAAAATGGAACCAAGATGATTTGAAAAGGGCATTCAAACTTGTTGAAGATGGAACAGCAATAAGAGAGGCAGCTCGGACTTGTGGCGTCCCATTTTCAACTCTCCAAGAAAGACTGAAATACAAGAACTGTGAATCACCATCTTTGGGAAGAAATCCAGTTTTTACAAAGGAGCAAGAAACGGAAATGGCAGACCAGATAAAATTCCTTGGTAAGATATTTTATGGTTGCACTTCAATTCAAATACgtaaaatggcctatgaatacgcagtcaaaaataatatgaaccataattttaatgaaacttttggAATGGCTGGAAAAGATTGGTTTAAAGGATTTATCAAAAGCAATAACTTATCTGTTCGAAAAGCAGAAGGAACGAGTCTAAACAGAGCTACAGGTTTTAACAAGAATGAagttactatgtttttcaagcTGCTTGAGGAGTTGATGGATAAATACAAGTTCTTACCAAGGAATATCTATAATGTCGACGAGACAGGCATCTCTTCTGTGCAAGATCCAGGAAAAATTGTCACTCATAAAGGTCAAAAGCATGTGGGTTCTATAACTTCGGGTGAAAGAGGGAAAACTGTAACAGCTGTGTGCGCAGTAAGTGCTACTGGGGTTTACCTTCCTCCAATGCTTATTTATTCTCGTCAGAGACATTCACCAGCATTGGAATACGATGGTCCACGTGGCGCTATATACCGCTGA
- Protein Sequence
- MSGTRRRSQGLKVKWNQDDLKRAFKLVEDGTAIREAARTCGVPFSTLQERLKYKNCESPSLGRNPVFTKEQETEMADQIKFLGKIFYGCTSIQIRKMAYEYAVKNNMNHNFNETFGMAGKDWFKGFIKSNNLSVRKAEGTSLNRATGFNKNEVTMFFKLLEELMDKYKFLPRNIYNVDETGISSVQDPGKIVTHKGQKHVGSITSGERGKTVTAVCAVSATGVYLPPMLIYSRQRHSPALEYDGPRGAIYR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00700032;
- 90% Identity
- -
- 80% Identity
- -