Ajug011596.1
Basic Information
- Insect
- Amorpha juglandis
- Gene Symbol
- -
- Assembly
- GCA_949126905.1
- Location
- OX421378.1:3384336-3384719[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5e-13 3.6e-10 39.8 0.1 1 40 9 48 9 54 0.89 2 2 3.7 2.7e+03 -1.4 0.0 33 43 116 126 116 127 0.84
Sequence Information
- Coding Sequence
- ATGCCTCCAAAGCGTGCTACGTGGTCAGAAGAAAGTTTAAATGCAGCCATGACAGCTGTAAAACGTGGACAGTTTTCGCAACGTGCTGCAGCAGATCGTTATAATATTCCAAGAAACACGCTCAGAAACCACTTAAAAAGTGGCAAAAGCACAAGGAAGTTAGGCCGATATTCAGTATTAGATGAGGAACAGGAAAATGGCCTTGTCAGCAGGATCAAGAAATTTGCAAATATTGGCATGCCTCTTACACCTCAAACGATTCGTAGACAAGCATTTATTTTCTGCGAAAAATTCAAcattaaacacaattttaataaaagtaatgGCCTTGCGGGTAAGAAATGGCTTCAGATGTTCTTAAAGCGGCATCCCGAAATGTCGTAG
- Protein Sequence
- MPPKRATWSEESLNAAMTAVKRGQFSQRAAADRYNIPRNTLRNHLKSGKSTRKLGRYSVLDEEQENGLVSRIKKFANIGMPLTPQTIRRQAFIFCEKFNIKHNFNKSNGLAGKKWLQMFLKRHPEMS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -