Amin003463.1
Basic Information
- Insect
- Amiota minor
- Gene Symbol
- -
- Assembly
- GCA_037043295.1
- Location
- JBAMAW010000383.1:333772-336062[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00082 0.083 14.0 1.9 1 23 238 261 238 261 0.96 2 12 3.6 3.7e+02 2.5 2.9 1 21 268 288 268 289 0.81 3 12 0.01 1.1 10.5 5.3 1 23 298 320 298 320 0.97 4 12 3.1e-07 3.1e-05 24.8 1.1 1 23 329 352 329 352 0.98 5 12 0.00057 0.058 14.5 3.6 3 23 361 381 360 381 0.98 6 12 0.12 12 7.2 0.6 3 23 409 430 408 430 0.95 7 12 1.1 1.1e+02 4.2 1.0 1 23 466 489 466 489 0.96 8 12 0.35 35 5.7 2.1 1 23 526 549 526 549 0.96 9 12 0.00012 0.012 16.6 2.9 1 23 560 583 560 583 0.95 10 12 0.00028 0.028 15.5 1.1 1 23 597 619 597 619 0.96 11 12 1e-05 0.001 20.0 1.4 1 23 625 647 625 647 0.96 12 12 2.6e-05 0.0027 18.7 4.1 1 23 653 675 653 675 0.98
Sequence Information
- Coding Sequence
- ATGGATCAAATAGAAATGATGCCACAGCAACTCTGCGAGCTATGTGCAGCAGAACTAAAAATTGCATACGACTTTGTAGTGCGTGCACGCCAGACAAACAATCGCTTTCTTGCGTCAATTGAAGAAATTGAGACTTCAGCAATGCCTGTAATGATTACCGACTGTTTACAAGAAATACCAATGATTTTGTGCCCAGAAGAAGgagaagagaaagaagaaggaaTTATTGTTTTACCTAAGATTGTGGAAGATGAAATCGCTGAAACATCAAATGACAATGATCCATTAATGGAATGTAAGGACAAACAACAATCctggaaatataaaaaaaaaaaaccgaggCTAAGCTATTTAAATGTAGCCAATGCAGCACATCTTTTCATTGGCCACAAAACCTTAAGCTGCACATGCGGAAGCACACTAATAAAGAAGATTGGCTATCTTGTCCACACTGTAGTCAACCATCCTGCTGTTGATAACGAGCAGTATATGTCACTTGCTGAAAACCTTTGCTTTGATAATGAAATGTCAAAAGAACAATTTATAGAAAGCATTCgaaatgaaatagaaagtGGTAATAATTCGTTCTTTTGTTCCATAACTAATCAAGCGGGTTATGAACTAAGCCTTGATAGTTCAGATACAGATAGTGAATCCGGTGATAAGCCAACAACTGCAAAGAATAAGGATGCCAAATTAAGAaggatacaatacaattgtgAACTTTGTGAGGCGAATTATAAACGAAAGTATCAGCTTTTccagcatcaacaacagcaacacaaatGGCTTGATGCGCCGCACGTATGCCCTCGTTGTGATGGACGTTTCGTGTGTAAGCAGTTActtgatcatcatcaaaaatCACAATGTAAAAATGCACAAAAGCGTTTTAATTGTCATAAGTGCCCATTGAGATTTAATTGGAAGCACAACTTAAAAACGCATTTAAACGAACACGATAATTCTCTCACAACTGAATTTTTTCAATGTACTGAATGTAAACGCAGTTTTGTGGATCAAAAAGGACTAACGGTGCACATGAAAACAATGCATGGTGAAGAATCAAGTTTCTTGCTATGTCAATGGTGTGAACGGAAGTTCTATCGACGCGACTGTTTAGTTAAACATATGCAGCGTCATGgcattaaagaaaaagatgtGCCACAAGCTGAGAATTTAATGGCAGCTATTGCTTCACCAAATTGCCATAAAAGCATTTTATGTAAAGTTTGTAATacaaatttgaacagtattaAAGAATTACGACTTCATATCAAGGATAATCATTATGGCAACAATTCACCTTTAAATTACTCCATAACCAATTCAGCTGGTTATGAATTGCATATTGAAGATTCAGATACGGAAGATGAGTGTGACGGATCATTGAAATACACATGTGATTTGTGTAAGATGCAACAACGTAGAAAACTTGAAGTGGTGCAACATCAGCGTATCTTTCATCGCTTTGGCAAATACCCAAACCAATGTgagaaatgcatttttaaatgtGTATCCAAGGATATACTTGATTATCACAAACGCACACAATGCTTTAATACCGAAAAACGTTACCAATGTGAAATatgttgttataaatttatgtggCAAGAAAATCTAGAATTGCACCAAAAGCTACAACATTCGGAGACAGCAAAACCTGCTAATCCCAAATTTGTGTGTCCACATTGTGATAAAAAGTATTATGTTAAAGGGTGTCTTAATAATCATATTAAAGATGTACACATTGATGGTAATCGAAAATATAAAGAGTCTCTCAAGAAATATCTATGTTCGCTTTGTGGCTTCCAAACTAGTCAAAAATCCAAATTAACAATACACACACGGGTGCACACAGGCGAAAAACCTtacaaatgtgatttttgtgATAAGAGCTTCGCAAGACGTTACCAACTCGATACTCATCGTGGAATACACACTGACGAAAAACCTTTCAAGTGCACTGAGTGCGACAAAAGCTTCATACGTTGCGATCGACTTCGTGATCATTTTCGGGTGCATATGAAAAGGTTGAAAAAGGAAAGCCTGAAAAATgctaaagataaaaaataa
- Protein Sequence
- MDQIEMMPQQLCELCAAELKIAYDFVVRARQTNNRFLASIEEIETSAMPVMITDCLQEIPMILCPEEGEEKEEGIIVLPKIVEDEIAETSNDNDPLMECKDKQQSWKYKKKKPRLSYLNVANAAHLFIGHKTLSCTCGSTLIKKIGYLVHTVVNHPAVDNEQYMSLAENLCFDNEMSKEQFIESIRNEIESGNNSFFCSITNQAGYELSLDSSDTDSESGDKPTTAKNKDAKLRRIQYNCELCEANYKRKYQLFQHQQQQHKWLDAPHVCPRCDGRFVCKQLLDHHQKSQCKNAQKRFNCHKCPLRFNWKHNLKTHLNEHDNSLTTEFFQCTECKRSFVDQKGLTVHMKTMHGEESSFLLCQWCERKFYRRDCLVKHMQRHGIKEKDVPQAENLMAAIASPNCHKSILCKVCNTNLNSIKELRLHIKDNHYGNNSPLNYSITNSAGYELHIEDSDTEDECDGSLKYTCDLCKMQQRRKLEVVQHQRIFHRFGKYPNQCEKCIFKCVSKDILDYHKRTQCFNTEKRYQCEICCYKFMWQENLELHQKLQHSETAKPANPKFVCPHCDKKYYVKGCLNNHIKDVHIDGNRKYKESLKKYLCSLCGFQTSQKSKLTIHTRVHTGEKPYKCDFCDKSFARRYQLDTHRGIHTDEKPFKCTECDKSFIRCDRLRDHFRVHMKRLKKESLKNAKDKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -