Amin015396.1
Basic Information
- Insect
- Amiota minor
- Gene Symbol
- -
- Assembly
- GCA_037043295.1
- Location
- JBAMAW010002155.1:3840929-3848008[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 4.5e-05 0.0045 18.0 0.7 1 23 434 456 434 456 0.98 2 9 1.1e-05 0.0011 19.9 0.7 1 23 462 484 462 484 0.97 3 9 0.21 21 6.5 0.5 3 23 492 512 491 512 0.97 4 9 1.5e-05 0.0016 19.4 1.1 1 23 518 540 518 540 0.99 5 9 0.00057 0.058 14.5 2.1 1 23 819 841 819 841 0.98 6 9 1.1e-05 0.0011 19.9 0.7 1 23 847 869 847 869 0.97 7 9 0.67 68 4.8 1.9 3 23 877 897 876 897 0.97 8 9 4.9e-06 0.0005 21.0 1.3 1 23 903 925 903 925 0.99 9 9 6.8 6.9e+02 1.7 0.1 3 17 979 993 977 994 0.88
Sequence Information
- Coding Sequence
- ATGCCGAAGAAAGCAAAATTCAGTAAAGAAGACGaggaaaaaatcataaatttcgTTAAATTGAACGAAATTTTATATGTGAGAAACAAAAGATTTCATGACACCGAAGCCAGACATCGTCTGTGGTTGCAATTAGCACATGCATTGAccatggatgTCGAAGTGGTGAAAAAGAAATGGCAAACTATGAGGGATTATTTCGTTCGAAcccagaaaaacaaaacaacggACTCAGCACCTATGCCATTGTCGAGGAGGGATGAATCACTTTCGTTTTTGCTTCAAACACCGATTTTGAATAGATCttCGCTTTCATCATTGGCAACAGTCGTGGGAACATCAAAACATTCAGAGACACAATCACAAGTCGACAATGTTGACACAAATTCTAATGCAGATGATTTATCTAGTTTTGTTGATTCTGATTCAATAGTTTCTATGCCGCAGACACCAGAGTCAATGAGGAGTGTTTCAAGCGTTGGTGAATCGGACACGAATGCAATCCTAAGTGAATGCTTACCACATCACCTAAAATCACCAGATTTCAAGCCCGAATTTCCGACTGACGACATCCCAAAATTTTTCGATTCGATGGCAGCTATAGTTCGCAAGTTTTCACCAATATCAATTGCTcgaattaaaatgaaaattgctcAAATTGTTGGTCAAGAAGAAATAGCTTGGGCTGAGAAAGCAGTTGAATTCCGGTTGGAGTGCACACGTGCAGAAACTCATCTCCGACAATCTTTACCAAAGAAGGAAACGCGAACGCATAAAGCAAGTAGGCATAAGCAAGCCTCAGACAATTCTATTGAAACTTGCTTTATTGACAATAGTGCAGAATCAAAAAACTCAACACCATCAACAAGCACCAAGTTCAATTATATAGATTATCCCGATATGCAACTTCACGAAGATGCAGCAACAGTTGATCCTTTTGAatctgaaaaaattaaaaaggaaatcaatATATTAACTAATTACAACGTAAGTCATAAAAAATCATCAGTATCAGCTATAGATGAAGATCTGATACCGATTACAGCCAAAAATTCCGATGAAGATGACTGCAAATCAATTGAATCATTTAATTCTCGCTTAACTATGCGTGATTCTTCTGATGATGACGACTGGTCGGCAGAAtacaatgaagaaaatatcaaaccagcgaaaagaacaaaaaaagctCTACATGCCGAAGAAGCAGAATCATCAAATATTCCAAACAAAACTgaccacaaaaaaaatgaaaggacAACAccagaaataaatttttcaaaatatgaaaaaatagcTAAATATATATGCGAAATGTGTGGACAAACATTTACCGTGATGAGCTATTTTCAAATGCACATCAATCGCCACAAGGGAAAGCAAACTTTTGCTTGCGAAATATGCCCTGAAAAATACTATACTCAGCAAAGTTTAAAGCGCCATATGCTGAAGCATGCAGGTGCAAAACCAAATGCCTGTCGCTATTGTCCCCGTCGTTTCCTTGATTACAGCGCAAAAATGCGTCATGAACGAATACATACAAACGATAGACCTTACAAGTGTCCATATTGTAGCAAAGCGTTCACCTCAAATTATATACTCAAAAATCATGTACTGACACATATTGACTGTATTTTGCGTTTGGAACAAGCATTTGAATTCCGGTTGGAGTGCAGGCGTGCACAAACTCTTCTCCGACAATCTTTTGCACAAAAGGAAATGCGAACGCTAAACACAAGTAGACGTAAAAAAGCTTCAGACAATTCCATTGAAAATTGCTTTATTGACAATAATGCAGATCCAAGAATTTCAACACCATCCCCATCAACAAGCACCGAGCTCAATGATATAGTTTATCCCAAAGTGGAACTTCACGAAGACGCAGCAACAGTTGATCCTTTTGAATCtgtgaaaattaaaacagaaatcGACATTTCATCTAATTACAACCTTAGACATAAAGAATCATCAGAATCGGCTATAGATGAGGCTCTGATACCGATTACAGCCATGAATTCCGACGAAGATGATAAtaattctgatgatgatgactggtCAGCGGAATACaatgaagaaaatgttaaaccagcgaaaagaacaaaaaaatctttacTTGTCGAAGAAACAGAATTATCAAAGATTCTAAACAAAACTGACCtcagaaaaattgaaagaaataaaacatcaGAATCGGCTATAGATGAGGCTCTGATACCGATTACAGCCATGAATTCCGCCGAAGATGATAATTCTGATGATGACGACTGGTCAGCGGAATACaatgaagaaaatgttaaaccagcgaaaagaacaaaaaaatctttacATGTCGAAGAAACAGAATTATCAAAGATTCTAAACAAAACTGACCtcagaaaaattgaaagaaataaaactaaaaaaataagcaCCAAAACGGCAACAGACAATTTgtcaaatgatgaaaaaataccaaaatatatATGCGAAATGTGTGGACAAACATTTACCGTGATGCACTATTTTCAATCACATGTCAATCGCCACAAAGGAGAGCAAACTTTTGCTTGCGAAATATGCCCTGAAAAATACTATACTCAGCAAAGTTTAAAGCGTCATATGCTGAAGCATGCAGGTGTACAACCCAATGCATGTCGTTATTGTCCTCGTCGCTTCCTTGATTGCAGCGCAAAAGTGCGTCATGAACGGATGCACACAAATGATAGACCCTACAAGTGTACATATTGTGGCAAAGCTTTTACCTCAAATTATATACTCAAAAATCATGTACTGACACATACTGGAGAGCGCCCATTCAGAATTTGTGCGCAAGGTCATAATGATTCAGATGGATTTAATCTGTTTGATAGTACCATCGAAAGTAAAAAGACGCTCAATCGCCTCAAGAAAATTGTGGGCATAgagTTGAAAAAACTGCGAAACATGCCGGATAGTATTTGCAATAAATGTCAACAATCACTTGAGCAAGCATTTCAATTACGCTTGCAATGCCGTCAGGTTCAGACTTATCTGCTTGCCAAgatcaatcatcatcatataaaaGAAGAGGATTTTTTGTGCACCATAAGTGATAACAGCTTTGAAGACTCATGCGGTGAATATCAACCGGAAAgGTTGTGGAGCAAAAGCGTACCAAATGGACCACTAGATggactgaaacttagacactattag
- Protein Sequence
- MPKKAKFSKEDEEKIINFVKLNEILYVRNKRFHDTEARHRLWLQLAHALTMDVEVVKKKWQTMRDYFVRTQKNKTTDSAPMPLSRRDESLSFLLQTPILNRSSLSSLATVVGTSKHSETQSQVDNVDTNSNADDLSSFVDSDSIVSMPQTPESMRSVSSVGESDTNAILSECLPHHLKSPDFKPEFPTDDIPKFFDSMAAIVRKFSPISIARIKMKIAQIVGQEEIAWAEKAVEFRLECTRAETHLRQSLPKKETRTHKASRHKQASDNSIETCFIDNSAESKNSTPSTSTKFNYIDYPDMQLHEDAATVDPFESEKIKKEINILTNYNVSHKKSSVSAIDEDLIPITAKNSDEDDCKSIESFNSRLTMRDSSDDDDWSAEYNEENIKPAKRTKKALHAEEAESSNIPNKTDHKKNERTTPEINFSKYEKIAKYICEMCGQTFTVMSYFQMHINRHKGKQTFACEICPEKYYTQQSLKRHMLKHAGAKPNACRYCPRRFLDYSAKMRHERIHTNDRPYKCPYCSKAFTSNYILKNHVLTHIDCILRLEQAFEFRLECRRAQTLLRQSFAQKEMRTLNTSRRKKASDNSIENCFIDNNADPRISTPSPSTSTELNDIVYPKVELHEDAATVDPFESVKIKTEIDISSNYNLRHKESSESAIDEALIPITAMNSDEDDNNSDDDDWSAEYNEENVKPAKRTKKSLLVEETELSKILNKTDLRKIERNKTSESAIDEALIPITAMNSAEDDNSDDDDWSAEYNEENVKPAKRTKKSLHVEETELSKILNKTDLRKIERNKTKKISTKTATDNLSNDEKIPKYICEMCGQTFTVMHYFQSHVNRHKGEQTFACEICPEKYYTQQSLKRHMLKHAGVQPNACRYCPRRFLDCSAKVRHERMHTNDRPYKCTYCGKAFTSNYILKNHVLTHTGERPFRICAQGHNDSDGFNLFDSTIESKKTLNRLKKIVGIELKKLRNMPDSICNKCQQSLEQAFQLRLQCRQVQTYLLAKINHHHIKEEDFLCTISDNSFEDSCGEYQPERLWSKSVPNGPLDGLKLRHY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -