Amin012541.1
Basic Information
- Insect
- Amiota minor
- Gene Symbol
- -
- Assembly
- GCA_037043295.1
- Location
- JBAMAW010001787.1:2418364-2422315[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.013 1.3 10.2 0.2 1 23 372 396 372 397 0.94 2 15 0.29 29 6.0 3.5 3 19 409 425 408 427 0.92 3 15 0.01 1 10.6 0.8 2 23 469 491 468 491 0.95 4 15 0.026 2.6 9.3 0.5 1 19 497 515 497 518 0.90 5 15 0.00068 0.069 14.3 4.7 1 23 523 546 523 546 0.97 6 15 0.00097 0.099 13.8 1.3 2 23 551 572 550 572 0.96 7 15 0.0039 0.4 11.9 3.0 1 23 620 644 620 644 0.92 8 15 0.00016 0.016 16.2 2.4 1 23 684 708 684 709 0.95 9 15 0.06 6.1 8.1 1.5 1 23 734 757 734 757 0.96 10 15 0.0013 0.13 13.4 0.4 2 23 763 785 762 785 0.90 11 15 0.0051 0.52 11.5 0.4 2 23 789 811 788 811 0.96 12 15 0.0057 0.57 11.4 2.6 1 23 817 839 817 839 0.97 13 15 0.0084 0.85 10.8 1.0 1 23 843 866 843 866 0.95 14 15 2.8e-05 0.0028 18.6 0.8 1 23 872 894 872 894 0.98 15 15 0.0035 0.36 12.0 0.5 3 23 902 928 900 928 0.82
Sequence Information
- Coding Sequence
- ATGTCTGGAAATGTCGGTTatgtgaaaaagaaaacgcaattttgtttatattgtaaatgcacggatgaaaagaaaaagtattatGAGATATTTGGTGAACTTGGTTCTCAACTGAAGTTGAGTGaattaatacttaaatactttaaattgaaaattgtaaagtCACAGTCAACGAAAGATCAAGTGATTTGCGAACAATGTTtggagaaattaaattatgcaTTAGATGGCGATGAATActgtaaaagtaaaaaaaactcTACTGAAGCCAAGCAAATGTCATCGACAAAACGTACCCCGAAAACTAATGAAGTGGTGGTGATAACAAAATCACCAAACAACCAAAGTAATGATAAAGATaacaaaagtgaaaagaaaattgcagAAACGACCAAGAGAAAACCACCatcgaaagaagaaaaaactgtTGCAATTCCTAAAAATGACGGCGACGTGGAAGATGAACTTGAGAAAATTCTTCAACAAATTTTAGCAAACAGTTCTTCTGACACATTAAATGTTTGTCAGACCGAGGCCAATGAAGAGGCTTCTGTGTTGGTTTTATATGGAGAGGGAAATGCTACCGATGTTAATGATGTAGATGAACATGTTGATGGCAAAGTTATTGTGAAAGGCACAGAAACACTGTTTGCTgatattgaaaatatcaacaatgaaaacaaaacaatatcattaaaaaccaaaaatggtATTGAATATGTTATATCTGGAGGAGAAGACGAAAAAAATCAAGATGTTATTGAATTTGATATATCTTAtactggtggtggtggtgacgatggtgatgatatGGAGCACTCTGTAGTAATCAATGAAGATGAAACTTATGAAGACTTTGAACGGATAGAGGATTGTCCGAATGAAGAAGGATCCCAAGATGGAATCGAGTTGTGTACTCTGATACCATTTTCAAAAGAAGATGATGATCAGGTCTTGGATATAATATCGTTCCTTGATGAGGCAATTACGAGTAATTTAACTACATTTAAATTCTCATGGGTTACTCAGTGTCATATTTGTTGTTGGAATTGTGAAACCTTTGAAAGTCTTGTTGCTCATGTACAACGTAAACACAAGTTAGccaataatttatatgcatGTCCAGCAAAGGATTGTGGTCAGGAACTGGAAGGAAAGAAACTATTAACACGACATTTGATATTACATCATGGTCCTTTAAATAAATTATTGATCTATGGATGCTGTCCAGAATGTGGCTTAACATTTTCCAATTTCATGGTCTTTAATAGACATTCATGCGCGCGTATGATCAAGAGACGTCGTGGTATACGTTTGCAATGCAAATTATGtgatattgattttttatcaaTGAAACGTTACGTATTTCATatgcaatttcatttggaaaaGCATCGTCCCAAGGTTTGTTTAATTTGCAATTATACATGCAGAGACATAGAACAACTTTTTGAGCATATCAACTACGATCATGAATTTCAAGATGGCTATCCTTGTCGCAtATGTGATCGCACTTTTAAAGCAAAGCAGAATATACTGGATCATAAACACTTAAGTGATGATCACTTTTTCTGTAATCAGTGTAACAGGTCTTATCATTTTAAATCAAGCCTAATATCACACATTAAAACGTCGCATGCACCTACGATCCCATGTTCTTTGTGTAATAAGGAGTTTTCTAATGAGACAAGTTATCGTTATCATAAAAAATCGCATATAAATGCATCAACAGCTTTGCATGCGTGCAGCAATTGTGGACTCATAAGTGGGGATCGGAATAGAATGTTGGAACATGTTGATGAAAGTGattcaaattgttttggtGTTGAAATTGAAGACGAAGTGGTATCAGTCGCTTTCACCTGTGAGTATTGTTTACGTGATTTTAAGAGCAAATGCGATTTGAGGTTGCATCGTTCCACTGGTGTCCATGCGGATAAGCAATACTTTTGTATATCTTGCAATAAATCCTTTGCTACTATGAAGTCTTATTGGCCACACAAAAAGCATGTTACTTCGCAATGGAGAAGAGAAAACATCTGCTATCTTTTTATGTGTAATGTTGATGAATGTGAAGAAAGTTATACACGTTGGACATCACTTTATAGACACAAACGACGACATCATATGGTAACTAAAACTGATGATGCTGATTTTGAGGAAGAACCCGAGGAAAAAACggagaataacaaaaaatcgtTCGTATGTCAGTTTTGTGATAAGGCATGTCTGACAAAAATGTCACTTTCCGTGCACATTGCACGGCGACATAATAACAAAAATGTGCAATGCTCAGTTTGTAATGCCAGTTTTAAGAATGAACAAGCCttgcaaaaacattttgaCTATTTGCATGTGCCAGTTGAGTGTTCGAAATGTCTAAAAGTGGTAAAGAATCGTCGTAACTATGAGTCTCATGAACGAGTTGTGCATTTGGCTGAAAAACGTTATTTCTGCAACATTTGTAGTAAGGGTTTCTATCACAAAACTGATAAGGAAGCACATGTTAAGTTGCATGAACAAATCTATACATGTGAGGAATGCGATTTCACAACAAATTATGCTAAATCATtggaaattcatttttcaagcTTTCATCGGGGAGAATTTAATTATGAGTGTGAAGtgtgtaaacaaaaattttcacgGAAGCCAGCACTAAAAgcacataaagaaaaacattgtATGTTGAAACGATTTGTGTGTGAGAAGCCGAAAGATAAATCTTGTCAAAAAGCATTTCCAACATTAGCCTTGCTTAAAAGACATCTCAAGTacaaacatgatgatgatgatggtattgATGATGGTGTTAATGTTAAGCCATCTAATCATGAAGAAGGACCATTACCTGCCAAGCGTTCGAAACGACTACAaatgaagaataataaaaactatacgATTAGTTCTAATacaaacaatgatgatgaagatgttgatgatgccATGAAAGTTGATCAGGTTTTATCAACTGAGGAATATGAAATTATAGATGCCAATGATATACTATATGAGGTAGAAGTTGCTGAAGCTGAAGttgaaaaaaaagaggaaaataaggagaagaaaaaaagactatatttgaaatatgaaGTTGTTTAA
- Protein Sequence
- MSGNVGYVKKKTQFCLYCKCTDEKKKYYEIFGELGSQLKLSELILKYFKLKIVKSQSTKDQVICEQCLEKLNYALDGDEYCKSKKNSTEAKQMSSTKRTPKTNEVVVITKSPNNQSNDKDNKSEKKIAETTKRKPPSKEEKTVAIPKNDGDVEDELEKILQQILANSSSDTLNVCQTEANEEASVLVLYGEGNATDVNDVDEHVDGKVIVKGTETLFADIENINNENKTISLKTKNGIEYVISGGEDEKNQDVIEFDISYTGGGGDDGDDMEHSVVINEDETYEDFERIEDCPNEEGSQDGIELCTLIPFSKEDDDQVLDIISFLDEAITSNLTTFKFSWVTQCHICCWNCETFESLVAHVQRKHKLANNLYACPAKDCGQELEGKKLLTRHLILHHGPLNKLLIYGCCPECGLTFSNFMVFNRHSCARMIKRRRGIRLQCKLCDIDFLSMKRYVFHMQFHLEKHRPKVCLICNYTCRDIEQLFEHINYDHEFQDGYPCRICDRTFKAKQNILDHKHLSDDHFFCNQCNRSYHFKSSLISHIKTSHAPTIPCSLCNKEFSNETSYRYHKKSHINASTALHACSNCGLISGDRNRMLEHVDESDSNCFGVEIEDEVVSVAFTCEYCLRDFKSKCDLRLHRSTGVHADKQYFCISCNKSFATMKSYWPHKKHVTSQWRRENICYLFMCNVDECEESYTRWTSLYRHKRRHHMVTKTDDADFEEEPEEKTENNKKSFVCQFCDKACLTKMSLSVHIARRHNNKNVQCSVCNASFKNEQALQKHFDYLHVPVECSKCLKVVKNRRNYESHERVVHLAEKRYFCNICSKGFYHKTDKEAHVKLHEQIYTCEECDFTTNYAKSLEIHFSSFHRGEFNYECEVCKQKFSRKPALKAHKEKHCMLKRFVCEKPKDKSCQKAFPTLALLKRHLKYKHDDDDGIDDGVNVKPSNHEEGPLPAKRSKRLQMKNNKNYTISSNTNNDDEDVDDAMKVDQVLSTEEYEIIDANDILYEVEVAEAEVEKKEENKEKKKRLYLKYEVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00063038;
- 90% Identity
- -
- 80% Identity
- -