Basic Information

Insect: Amiota minor
Gene Symbol: -
Assembly: GCA_037043295.1
Location: JBAMAW010000307.1:148545-150412[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00031 0.031 15.4 1.3 1 23 270 293 270 293 0.98

2 8 0.00017 0.017 16.1 0.8 1 20 333 352 333 355 0.93

3 8 1.7e-06 0.00017 22.5 0.4 2 23 359 380 358 380 0.97

4 8 0.0025 0.25 12.5 3.1 1 20 386 405 386 408 0.95

5 8 1.6e-05 0.0017 19.4 0.4 3 23 416 436 414 436 0.97

6 8 0.00031 0.032 15.3 2.7 2 23 443 464 443 464 0.95

7 8 0.0002 0.02 16.0 0.4 1 23 470 492 470 492 0.95

8 8 3.4e-07 3.5e-05 24.6 0.1 1 23 498 520 498 520 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00031	0.031	15.4	1.3	1	23	270	293	270	293	0.98
2	8	0.00017	0.017	16.1	0.8	1	20	333	352	333	355	0.93
3	8	1.7e-06	0.00017	22.5	0.4	2	23	359	380	358	380	0.97
4	8	0.0025	0.25	12.5	3.1	1	20	386	405	386	408	0.95
5	8	1.6e-05	0.0017	19.4	0.4	3	23	416	436	414	436	0.97
6	8	0.00031	0.032	15.3	2.7	2	23	443	464	443	464	0.95
7	8	0.0002	0.02	16.0	0.4	1	23	470	492	470	492	0.95
8	8	3.4e-07	3.5e-05	24.6	0.1	1	23	498	520	498	520	0.98

Sequence Information

Coding Sequence: atGATAAAACTACAGCCACCAACGACAGTACATAGACAGTTTCATAATTTTCGCTGCGGTGAAGTTCTTTGCATTGGACCAACCACATATCATGTGTGTTGTGCACTCTGTGGCCAAAAGATCCTCTATGAATCGTTTCCGCAGCACTTCCGCCTTGAACATCTTTCCCAGCAAGAGGAATGTAAATTATTTGATAAAGAtggtaaattaattaaaaaaggtGAGCCAGTGATGAACGGCGGCTCGCCTATTAAAGTTGAAGTCGATCCCATCGCTCATGGGAATAACGAACATGAGAATGTGGAATTGGCACAAATTGCATTGCTGGATTTATATGATGACAAcgataatgaaaatgatgttgctgatgctgatgaaaGCTATGACAATTGTGGTGGTGATGAACAAGAAACAAAATGGAATGATGTTGAAACTGCAGCAACCAAAGTGCAAATTGTCAAAAGAAGTAGACCAAAGCGGAGCGTTACGCGAGAACCGAGCAAACGACGGAAGCGTGCTGCTGTTAATAACATAATAACAAAGACAGAGGCACCAATGAAGGAAGaatcaacaacattaacaactaAAAATGAAGACAAAGAGGATAAGCAGACACCAGCAACATTACAATTGGATAATTTTACACATGaagctaatgatgatgacgatggcatTAATAAGACCACAGATATtgaagattataaaaatattcaacaaattGATAATCtcaattataatgatgatggtcatGAGGACTGCGATGACAATGAAAGCGATAGTAATAGCAACTATGAAATGGCGATATCATTTCCATGTGATGAATGTGAGCGACGCTATATTAGTCGCCGTGGTCTACAATATCACAAACGAACAAAACATAATCCtaatcatataaaaaacatcaagaaaTCTTCAGTTAATGCTGAAAGCtcaagaaaaaccaaaaagaaaaatgctacTGCTGATACGTCGTCACCATCATCGATTCAGGAGCAGTTCAAATGCAGCGACTGTGATCAAGTATTTCGAAACGAACGTGAATTGCGTGGCCATCGTTGGAAGCATACTGGAATCAAGTGTGATATTTGTGGTAAACCGTTTTCACAAACTGGCAATATGACAAGGCATCGTATACGTCATTCTGGCAATAAAACATTCAAGTGCGGAGAATGTAATGCAAGTTTCTATACCAACAAAGAGCTTAACTCGCACAAGATTTGTCACACGGGCAAAATGCCAATGATTTGCGAAATTTGTGGCCGCCCCTGTCGCGATCGTGGCGTCTTAACTGCGCATATGCGTCGCCATACTGGCGAACGGCCGGCAAAATGTGATGTGTGTGGCAAATGCTTTTATAGTTTCCATGATTTAAATGTGCATGCAGTGTCGCATACCAGTGCTCGGCCATTTGCCTGCGACATTTGTGGCTCGACATTCCAACGCAAGAAAGCATTGCGTGTACATAAATTGCTGCATTCTGGTCAAAGGAAATACGATTGCAAAATCTGTGGTAAAGGATTCTCGCAATATGGTGGACTAAACGCTCATTTACGCATACACGATGCATCGGCTGTACGTGCGGCTACCGCGATAGTGGCTATGGATTCTAGCAATTCAAAAACATTGGCAACACCAAGTATTAGTGATGTTGCTGCTAATGGCATCAGTGATACTGACGATCTTATTCAAGAGGTGGGCGACAGTGACATCCCTTTAGAAGAAAGCACATATACGAATCAAgaacatataaataatatggGAGCCACAGGTGTTGCCGCAGGCAATGTGACATTTATCATGACCACAGTGTAG
Protein Sequence: MIKLQPPTTVHRQFHNFRCGEVLCIGPTTYHVCCALCGQKILYESFPQHFRLEHLSQQEECKLFDKDGKLIKKGEPVMNGGSPIKVEVDPIAHGNNEHENVELAQIALLDLYDDNDNENDVADADESYDNCGGDEQETKWNDVETAATKVQIVKRSRPKRSVTREPSKRRKRAAVNNIITKTEAPMKEESTTLTTKNEDKEDKQTPATLQLDNFTHEANDDDDGINKTTDIEDYKNIQQIDNLNYNDDGHEDCDDNESDSNSNYEMAISFPCDECERRYISRRGLQYHKRTKHNPNHIKNIKKSSVNAESSRKTKKKNATADTSSPSSIQEQFKCSDCDQVFRNERELRGHRWKHTGIKCDICGKPFSQTGNMTRHRIRHSGNKTFKCGECNASFYTNKELNSHKICHTGKMPMICEICGRPCRDRGVLTAHMRRHTGERPAKCDVCGKCFYSFHDLNVHAVSHTSARPFACDICGSTFQRKKALRVHKLLHSGQRKYDCKICGKGFSQYGGLNAHLRIHDASAVRAATAIVAMDSSNSKTLATPSISDVAANGISDTDDLIQEVGDSDIPLEESTYTNQEHINNMGATGVAAGNVTFIMTTV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -