Amin003468.1
Basic Information
- Insect
- Amiota minor
- Gene Symbol
- -
- Assembly
- GCA_037043295.1
- Location
- JBAMAW010000383.1:355449-358319[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0071 0.72 11.1 1.2 1 21 154 174 154 175 0.93 2 13 0.017 1.7 9.9 1.3 1 23 184 206 184 206 0.93 3 13 9.2e-05 0.0094 17.0 2.2 2 23 214 236 213 236 0.96 4 13 0.00035 0.036 15.2 2.3 2 23 244 265 243 265 0.96 5 13 0.0083 0.84 10.9 0.3 2 21 292 311 291 312 0.94 6 13 0.0034 0.34 12.1 4.6 1 23 360 383 360 383 0.98 7 13 0.024 2.4 9.4 1.1 2 23 421 443 420 443 0.93 8 13 0.00014 0.015 16.4 1.0 2 23 459 481 458 481 0.95 9 13 0.00021 0.021 15.9 0.3 1 23 495 517 495 517 0.95 10 13 0.00074 0.075 14.1 3.3 1 23 523 545 523 545 0.99 11 13 2.6e-07 2.6e-05 25.0 1.7 1 23 551 573 551 573 0.98 12 13 0.00022 0.022 15.8 6.3 1 23 579 601 579 601 0.95 13 13 7.5e-06 0.00076 20.4 0.2 1 23 607 631 607 631 0.91
Sequence Information
- Coding Sequence
- ATGCTTCTGGATTTGTTAAAGGAAGTAACTAAAATTGAGATAGGATTAGAATACGGAGATAAGTTACCACAGTTCGTATGTTGTACTTGTGTCCGGAAACTACAAATTGCCtatgattttgttattcaaGCACGTCAGGCAAACAATGACATGTTGGAATTTCTTGCAGGGATTAACACAGAATGCCTGCAAGAAGTTCCAATGGAGTTTTGTACTGAACAATTTTTGGAGATAAAGTTAGAAGAAGACGGTTACGAAGAggcaatttcaaaaaatagaTCTTATTTGAGTGATCAAAGCAAAATGGatgataaaacaaatacatcaCATGatcagaaaaatattaatcaaacaCTAGATCCCTTAGTTATGAATAAAACTACAAATAACACTGCAAAACGGCCAAAGGACATCATAAGTGATGAAACTAGGCTTGAACATGAATGGAGTGAAGCAGTTCATGTTTGCAGACGTTGCGATGCAAgatttgtaaataaacaacTATTGGAACATCATTACGAAACACAGTGCAAAAATTCACATAAGCGTTTCATATGTAAGAAGTGCCCTCTTAGATTTCGATGGAAACGCAATTTATTAACACATTACGATGACCATAGGAAGAACAAAGAAACATTACAATGTTCGAAATGCAACCGAACCTACGAtgacaaaaaatcatttactaTACACATGCTTAAAACTCATGCGGACAGTTCTAAAATGCTTTCTTGCCAATGGTGCAGTCGAACATTTTACCGCAGGGATTATATGTTAAAACATCTAAAGCGCCATGGCATTAGAGAAAAAGATCTGCCTCTGGCTGAAATGCTTGTTATGGCAACTTCCAAACCAAATGGTGATAAAATCATCCAATGCAAAATTTGTAATCTACAATTTGAACGGATTTGTGATTTAAAAGAACACATTCTATTGGAGTTGAAATTAAACTTATCGAAACATCAAAGCTACGAATCATTAACCAATTACACAATTACAAATGAATCTGGTTTTGAATTGCACCTCGATGATTCTGAAACAGATGAAGAAGATTCAGTTGAGAGTAAGCAGATGTCTTACAAATGTGAGATTTGTCAGGTGCAGTGTAAGcgcaaatttgaaatgtttcaACATCAACGATCAATGCACCGATTTGAACATTTGCCACATTCTTGCGAGAAGTGTATCTTTAAATGTGTATCAAagaaTATACTTGATCATCACCGGACTACACAATGCTTCAATGAGCAGAAGCAGTTAACTTGTGTAAAATGTTCTTATAAATTCATGTGGTCTGAAAACTTGACGCGGCATATGTTGTTCCAACATCCGGTGGAAGAGGTTGTAGGAGAAACCGATGCGACTGCCCAGTTACAGTGTCCACATTGTGATAAATCTTACCAATTAAAGGGACGCCTTAATAATCATATACGCGATGTACATATTGATGGCGATCgcaagaagaaagaaaatgaaagaaaatttctttgttctttgtgTGGCAAGGAATTGCAATCAGCTGCTTCCTTAGACAGACATATGCGAAGACATACTGGAGATAAACCGTTTAAATGTGATATGTGCGAAATGGCATTTACGCGAAACTGTGAAATGTTACTGCATCGAAGGAAACACACGGGCGAAAAGCCATATCATTGCACTGTTTGTGGTAAAGATTTTGCTCGCTCTGACAAACTCAAACGGCACATGTTGATACATAGTGGCTTAAAGCCACACAAATGCACAGTGTGTGGTAAATGCTATCGACAGTCTAAAGATTTAAAACTGCATTTTCTGCAACACACTGGAGAAACCCATTTTGAATGTAATATATGTGGCGAGCGGTTCATTCAGAATGTCACTTTGGAGAAGCACCGAATGATGCGTGGAcattttagataa
- Protein Sequence
- MLLDLLKEVTKIEIGLEYGDKLPQFVCCTCVRKLQIAYDFVIQARQANNDMLEFLAGINTECLQEVPMEFCTEQFLEIKLEEDGYEEAISKNRSYLSDQSKMDDKTNTSHDQKNINQTLDPLVMNKTTNNTAKRPKDIISDETRLEHEWSEAVHVCRRCDARFVNKQLLEHHYETQCKNSHKRFICKKCPLRFRWKRNLLTHYDDHRKNKETLQCSKCNRTYDDKKSFTIHMLKTHADSSKMLSCQWCSRTFYRRDYMLKHLKRHGIREKDLPLAEMLVMATSKPNGDKIIQCKICNLQFERICDLKEHILLELKLNLSKHQSYESLTNYTITNESGFELHLDDSETDEEDSVESKQMSYKCEICQVQCKRKFEMFQHQRSMHRFEHLPHSCEKCIFKCVSKNILDHHRTTQCFNEQKQLTCVKCSYKFMWSENLTRHMLFQHPVEEVVGETDATAQLQCPHCDKSYQLKGRLNNHIRDVHIDGDRKKKENERKFLCSLCGKELQSAASLDRHMRRHTGDKPFKCDMCEMAFTRNCEMLLHRRKHTGEKPYHCTVCGKDFARSDKLKRHMLIHSGLKPHKCTVCGKCYRQSKDLKLHFLQHTGETHFECNICGERFIQNVTLEKHRMMRGHFR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00063001;
- 90% Identity
- -
- 80% Identity
- -