Basic Information

Insect
Amiota minor
Gene Symbol
-
Assembly
GCA_037043295.1
Location
JBAMAW010000383.1:387844-390805[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.036 3.6 8.9 0.2 2 23 268 289 267 289 0.96
2 15 0.0049 0.49 11.6 5.2 1 23 376 398 376 399 0.96
3 15 0.021 2.1 9.6 3.1 1 21 406 426 406 427 0.93
4 15 0.014 1.4 10.1 4.2 1 23 436 458 436 458 0.97
5 15 0.0023 0.24 12.6 0.4 1 23 465 488 465 488 0.94
6 15 0.0004 0.04 15.0 3.7 2 23 496 517 495 517 0.97
7 15 5.6 5.7e+02 1.9 0.1 5 21 547 563 543 564 0.87
8 15 0.0032 0.32 12.2 4.6 1 23 611 634 611 634 0.98
9 15 0.0058 0.58 11.3 0.4 2 23 672 694 671 694 0.94
10 15 4.7e-06 0.00048 21.1 1.2 2 23 731 753 730 753 0.95
11 15 0.00012 0.012 16.6 0.2 1 23 767 789 767 789 0.96
12 15 0.00018 0.019 16.0 2.2 1 23 795 817 795 817 0.99
13 15 2.5e-07 2.5e-05 25.1 2.4 1 23 823 845 823 845 0.98
14 15 0.0018 0.18 13.0 7.1 1 23 851 873 851 873 0.97
15 15 2.2e-05 0.0022 19.0 0.1 1 23 879 903 879 903 0.91

Sequence Information

Coding Sequence
atgacAGGTAATAGAATTTGCAGAACCTGTGATATTTCTAATCCTGCTGAAGTATGCAGATTAGATTCATGTCCTAAGAAATATTCTGGAAAAATGCTTTTGGATTTATTGATAGATGTGACCAAAATTGATGTGGAGATCGGGTACTTAGATAAGTTACCGCACAATCTGTGCATCTCTTGTAGTCGAAAACTTAGAAGTgcatatgattttattattcaagCACGTGAAGCAAATAAGGAAATGATGGATTTTATTAAAGCCACTGAACTAGATTCTAAGCCAAATATCGATAGAGAATGCCTTCGAGAGACTGCAATGGAAGTTTGCACTGATCAGTTTGTAGAAGTAAAGTTAGAGGAACCATGTGAAGAAGCTACCACGGAATTAGTCGCTtctttaatgaaagaaaaccaAGTTGAATATGAGCCGCAAGAGCATGATGATGGCAAAAGTGATAACAATCAAACGTTGGATCCTCTGGTTATgactgaaaaatatattaacattgcaactgaagaagaaaaaactttcattCGACATTATGAGAAATCAAGTTCTGATGAACTAGATGAATTGCCACTGCAACAACGACGACTCAAGTTAAAGAAAGCAGATAGAGGACTATCTTTTAAAACTGATCGAAAGTCCATTCGATGGGTACGCAAACACAGTCATTTGGGAAAATCACATAAACCAGATGAACCTccaacttcaaaaataacCGCATCACTTTCAGAAAGGAAACAAGCAAAAGCAGTTGACAGCAATCTATGTAAACCGCATGGTTGCAAACTAATACAGTGTATGATTTGTCTGCAGAAATATGCCAAAATCTCTGATTTACGGAGTCATTTAAATGAGCACCCGGACATTTCCACCCTTTCAGAAAAATCTAATGAATCCTTGCAGGAGATTGCCGACAGCTTTTTTGTTGACTGTAAAAATACAACTGAGGAAAAGCTGATAATGCGAATACGCAAAGATTTAAACGCTAAAAAGTTTGACAATTTCTACTCAATTACAAATCAATCGGGTTATGAGTTGAGTTTGTCGACTTCAGAGACTGAAAGTGAGGTTGACGCAGAATCGGAAGAGGACATCAGCAAAGTTTCAAAGAAGAATTACACCTGTGAAttgtgcaataaaaaatacctTCGAAAATATCAACTTTACGATCACCAGAGACAACATCATGAGTGGAACGATGCTGTTCATATTTGCAGACGGTGTGATGCACGATTTGTGAATAAACATTTACTGGAACATCATTACAAATCTCAGTGTAGAAATGCGCAGAAACGCTTCATATGTCGCAAGTGTCCCCTTAGGTTTCGTTGGAAACATAATCTAAAGACACATTACCGAGACCATAGAAAAACCatacaaacattTGAATGCATTCAATGCAAACGCATCTATGAagacaaaaaatcattaactATACATATGCTAACTGTCCATACAGATGAATCTAACTTACTGCCATGCCATTGGTGTAATCGAAAATTTTACCGAAGAGATTACATGTTAAAACATCTCAAAAGGCATGGTATTAGGGAAAAAGATTTACCTCTTGCGGAGACGCTTGTTATGGCGACTTCGAAACCCAATGGCGATAAAATCATTCAATGTATTAGTTGTAACATACAATTCGATCAAATTCGTAAATTAAAAGAACATATTCTGAtggaattgaaaataaacttaacGACACATCAAAGCTATGAATCGTTAACCAATTACTCAATCACGAATGAATCCGGTTTTGAATTACACCTCGATGACTCGGAGTCAGATGAAGAATCAATTGCAAGTAAGAAGATGTCTTACAAATGTGAGATTTGCCAGATCCAATGTAAGCGCAAGTTTGAAATGTTTCAACATCAACGATCAATGCACCGATTTGAGAATTTGCCACACTCCTGCGAGAAGTGCATTTTCAAATGTGTATCAAAAGAAATACTTGATCATCATCGGAAAACGCAGTGTTTCAATGATCAGAAGCAGTTGTCTTGTGAAAAATGTTCTTATAAATTCATGTGGCCTGAAAACTTGACGCGACATATGTTACTCCAACATCCAGTCGAAACGAAAAACAAGCTTACTCCACTTGAATCTAACTTCAGTACAGTGACAGACACGTCAGTTCGCAATATTGAAGCAGAAACAACTGCAATTACTCAGTTGCAGTGTCCACATTGTGATCGAACCTATGTTCAGAAATCTCGGCTTAATAATCATATACGAGACGTGCACATAGATGGcgataagaagaaaaaagatgCTGAAAGAAAATATCTATGCTCCTTATGTGGTAAAGAATCCCAGTCGGCAGCAAATTTGGTTACACATATGCGAAGACATACTGGAGAGAAACCATTTAAATGTGATATGTGTGAGATGGCCTTTCCACGACACTCTGAAATGTTGCAACATCGAAGAAAACATACAGGTGAAAAACCGTATCATTGCACGGTTTGTGGCAAGGATTTTGCTCGGTCTGACAAACTCAAGCGACATATGTTGACTCATAGTGGCTTAAGACCTCATAAGTgtacattctgtgaaaagtGCTATCGCCAATCTAAAGATCTGAAACTTCATTTGTTACAGCATACGGGAGAAACACCTTTTGAATGCAACATCTGCGGTGAGCGTTTTATACAAAGTATTGCGTTGGAAAAACATCGCATGATGCGTGGTCATTTcaacgaaaatatttaa
Protein Sequence
MTGNRICRTCDISNPAEVCRLDSCPKKYSGKMLLDLLIDVTKIDVEIGYLDKLPHNLCISCSRKLRSAYDFIIQAREANKEMMDFIKATELDSKPNIDRECLRETAMEVCTDQFVEVKLEEPCEEATTELVASLMKENQVEYEPQEHDDGKSDNNQTLDPLVMTEKYINIATEEEKTFIRHYEKSSSDELDELPLQQRRLKLKKADRGLSFKTDRKSIRWVRKHSHLGKSHKPDEPPTSKITASLSERKQAKAVDSNLCKPHGCKLIQCMICLQKYAKISDLRSHLNEHPDISTLSEKSNESLQEIADSFFVDCKNTTEEKLIMRIRKDLNAKKFDNFYSITNQSGYELSLSTSETESEVDAESEEDISKVSKKNYTCELCNKKYLRKYQLYDHQRQHHEWNDAVHICRRCDARFVNKHLLEHHYKSQCRNAQKRFICRKCPLRFRWKHNLKTHYRDHRKTIQTFECIQCKRIYEDKKSLTIHMLTVHTDESNLLPCHWCNRKFYRRDYMLKHLKRHGIREKDLPLAETLVMATSKPNGDKIIQCISCNIQFDQIRKLKEHILMELKINLTTHQSYESLTNYSITNESGFELHLDDSESDEESIASKKMSYKCEICQIQCKRKFEMFQHQRSMHRFENLPHSCEKCIFKCVSKEILDHHRKTQCFNDQKQLSCEKCSYKFMWPENLTRHMLLQHPVETKNKLTPLESNFSTVTDTSVRNIEAETTAITQLQCPHCDRTYVQKSRLNNHIRDVHIDGDKKKKDAERKYLCSLCGKESQSAANLVTHMRRHTGEKPFKCDMCEMAFPRHSEMLQHRRKHTGEKPYHCTVCGKDFARSDKLKRHMLTHSGLRPHKCTFCEKCYRQSKDLKLHLLQHTGETPFECNICGERFIQSIALEKHRMMRGHFNENI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00063005;
90% Identity
iTF_00063005;
80% Identity
-