Amin003464.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Amiota minor
Gene Symbol
-
Assembly
GCA_037043295.1
Location
JBAMAW010000383.1:336575-339542[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00048 0.048 14.8 1.0 1 23 212 234 212 234 0.98
2 16 0.00028 0.029 15.5 0.9 2 23 270 291 269 291 0.96
3 16 0.00039 0.039 15.0 4.2 1 23 382 405 382 405 0.97
4 16 0.0034 0.35 12.1 1.1 1 21 412 432 412 433 0.93
5 16 0.0081 0.82 10.9 1.1 1 23 442 464 442 464 0.95
6 16 8.8e-05 0.0089 17.1 1.6 2 23 472 494 471 494 0.96
7 16 0.00054 0.054 14.6 2.3 2 23 502 523 501 523 0.96
8 16 0.012 1.3 10.3 0.3 2 21 550 569 549 570 0.94
9 16 0.0051 0.52 11.5 4.6 1 23 618 641 618 641 0.98
10 16 0.061 6.2 8.1 0.7 2 23 679 701 678 701 0.92
11 16 0.00053 0.054 14.6 0.8 2 23 733 755 732 755 0.95
12 16 0.1 10 7.5 0.2 2 23 770 791 769 791 0.92
13 16 0.0005 0.05 14.7 2.3 1 23 797 819 797 819 0.99
14 16 4.4e-07 4.5e-05 24.3 1.5 1 23 825 847 825 847 0.98
15 16 5.3e-05 0.0054 17.7 5.2 1 23 853 875 853 875 0.97
16 16 5.9e-05 0.0059 17.6 0.1 2 23 882 905 881 905 0.90

Sequence Information

Coding Sequence
ATGGCGCTTAACAGAATTTGCAGAACTTGCGATGTAACAAATTCCGAAGAGATCTTTAAACTAAACTCATGTCCTAAAAAATATGGCGGAAAAATGTTTCTGGATTTGTTAAAGGAAGTAACTAAAATTGAGATAGGAACAGAATACGGTGAGAAGTTACCAAAGTTCATTTGTTGCTCTTGCGTTCGTAAGCTACAAAATGCCTATGATTTTGTGATTCAAGCGCATgaggcaaacaaacaaatgttggATTTTCTAGCAGCCATTAATACAGAATGCCTACAAGAAGTTCCAATGGAAGCTTGTACTGAACAATTATTAGAGATAAAGTTAGAAGAAGGTACCTACGAAGAGTCAATTTCACAAAACACAACTATTTTGAGTGACCAGAGTAAATTGGatgtaaaaagaaacacaTCAGATGATGAAGGATATATCAATCAAACAATAGATCCGTTAGTTATaaataacacaataaaaaatactgcTAAACGACCAAAGAAAAACGTCGGCAATGATACTGTAAGCTCTGaTGAACTTGATGAATTACCATTACAACAGCGGAGacttaaacaaaagaaagcgAATATATTAAGAACGAAGGATGATAGGCAATTGCGTAAGACTGAACAATTCATTTGTAATACTtgtaaagaaacatttttaagtAAGGATGACTTAGTCACTCATCTTAAAACGCATGAAGaagaacaaatcaaaataaaagtaacagCTACTCTTCCGGAATCAAGGCAAGCCAAAAATGTTGATATCAACCTATGCAAGCCACATGGATGCAAATTAATTCAGTGCATGATTTGCCtaaaaaagtttacaaaaatcTCTGATTTACGGAAACATTTAAATGAGCACCCAGTTCTATCTTCGATTGCAAAACGCTCTAACGAATCATTGCAGGATATAGCCAACCGTTTCTATATTCACTTCAAAGATGCAActgaagaaaatttaatatcgAAAATACGTGAAGATTTAAgcgataaaaaatttaataatttttactcAATAACAAATCAATCTGGATATGAATTAAGTTTGTCGAGTTCAGagactgaaagtgaagttgtATCAGAATcggaatcagaatcagaagaGCCCAAATGTAAAGCTTCAAGAAAGAGCTACATCTGTGAATTGTGCAATAAAATGTGTATTCGGAAACATCAACTTTTTGATCACCAGAGGCTTGAACATGAATGGAGTGAAGCTGTTCATGTTTGCACACGTTGCGATGCAAGATTTGTTAATAAACAACTATTGGAACATCATTACGAAACACAgtgcaaaaatatacataagcGTTTCATATGTAAGAAGTGTCCTCTTAGATTTCGTTGGAAGTACAATTTATTAACACATTATATTGACCATAGGAAGAACAAAGAAACATTACAATGTTCGAAATGCAACCGAACCTACGATGACAAAAAATCGTTTACTATACACATGCTTAAAATTCATGCGGACAGTTCTAAAATGCTTTCTTGCCAATGGTGTAGTCGAACATTTTACCGCAGGGATTATATGTTAAAACATCTAAAGCGCCATGGCATTAGAGAAAAAGATCTGCCTCTGGCTGAAATGCTTGTTATGGCAACTTCCAAACCAAATGGTGATAAAATCATCCAATGCAAAATTTGTAATCTACAATTTGAACGGATTTGTGATTTAAAAGAACACATTCTATTGGAGTTGAAATTAAAGTTATCGAAACATCAAAGCTACGAATCATTAACCAATTACACAATTACAAATGAATCTGGTTTTGAATTGCACCTCGATGATTCTGAAACAGATGAAGAAGATTCAGTTGAGAGTAAGCAGATGTCTTACAAATGTGAGATTTGTCAGGTGCAGTGTAAGcgcaaatttgaaatgtttcaACATCAACGATCAATGCACCGATTTGAACATTTGCCATATTCTTGCGAGAAGTGTATCTTTAAATGTGTATCAAagaatatACTTGATCATCACCGAAGTACACAATGCTTCAGTGAGCAGAAGCAGTTGTCTTGTGAAAAATGTTCTTATAAATTCATGTGGCCTGAAAATTTGACGCGGCATAAGTTGCTCCAACATCCGGACGAAGTAGATAGCAAAATGTCTTCACAAGAGTCAATCGTAAATAATTCCAACGAGGTTGTTGGCGAGACAGTTGCGACTGCCCAGTTACAGTGTCCACATTGTGATAAATCATACCAATTACAAGGTCGCCTTAGTAATCATATACGCGATGTACATACTGATGGCGGTCGCAAGAAGAgagaaactgaaaaaaaatttctttgttccttGTGTGGGATGGAATTGCTGTTTGCTGCTTCGTTAGACAGACACATGCGAACCCATACTGGAGATAAACCATTTAAATGTGATATGTGTGAAATGGCGTTTCCACGACATTACGAAATGGTAACGCATCGGAGAAAACATACTGGCGAAAAACCATACCACTGCACTGTTTGTGGCAAAGATTTTCCCCGATCTGACAAACTCAGGCGGCATATGTTAATACACAGTGACTTAAAACCACACAAGTGCACAGTATGTGGTAAATGCTATCGTCAGTCTAGAGAGTTAAAACTGCATCTTCTACAACACACTGGTCAAACATATGTAGAATGTAATGTATGTGGCGAGCGGTTCATACAGAATGCCACTTTGGAAAAGCATCGAATGATGCGTGGCCATTTTTGA
Protein Sequence
MALNRICRTCDVTNSEEIFKLNSCPKKYGGKMFLDLLKEVTKIEIGTEYGEKLPKFICCSCVRKLQNAYDFVIQAHEANKQMLDFLAAINTECLQEVPMEACTEQLLEIKLEEGTYEESISQNTTILSDQSKLDVKRNTSDDEGYINQTIDPLVINNTIKNTAKRPKKNVGNDTVSSDELDELPLQQRRLKQKKANILRTKDDRQLRKTEQFICNTCKETFLSKDDLVTHLKTHEEEQIKIKVTATLPESRQAKNVDINLCKPHGCKLIQCMICLKKFTKISDLRKHLNEHPVLSSIAKRSNESLQDIANRFYIHFKDATEENLISKIREDLSDKKFNNFYSITNQSGYELSLSSSETESEVVSESESESEEPKCKASRKSYICELCNKMCIRKHQLFDHQRLEHEWSEAVHVCTRCDARFVNKQLLEHHYETQCKNIHKRFICKKCPLRFRWKYNLLTHYIDHRKNKETLQCSKCNRTYDDKKSFTIHMLKIHADSSKMLSCQWCSRTFYRRDYMLKHLKRHGIREKDLPLAEMLVMATSKPNGDKIIQCKICNLQFERICDLKEHILLELKLKLSKHQSYESLTNYTITNESGFELHLDDSETDEEDSVESKQMSYKCEICQVQCKRKFEMFQHQRSMHRFEHLPYSCEKCIFKCVSKNILDHHRSTQCFSEQKQLSCEKCSYKFMWPENLTRHKLLQHPDEVDSKMSSQESIVNNSNEVVGETVATAQLQCPHCDKSYQLQGRLSNHIRDVHTDGGRKKRETEKKFLCSLCGMELLFAASLDRHMRTHTGDKPFKCDMCEMAFPRHYEMVTHRRKHTGEKPYHCTVCGKDFPRSDKLRRHMLIHSDLKPHKCTVCGKCYRQSRELKLHLLQHTGQTYVECNVCGERFIQNATLEKHRMMRGHF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00061333;
90% Identity
-
80% Identity
-