Amin003465.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Amiota minor
Gene Symbol
-
Assembly
GCA_037043295.1
Location
JBAMAW010000383.1:341684-344636[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00061 0.062 14.4 1.3 1 23 212 234 212 234 0.98
2 16 0.00028 0.029 15.5 0.9 2 23 270 291 269 291 0.96
3 16 2.1e-05 0.0022 19.0 1.4 1 23 382 405 382 405 0.97
4 16 0.011 1.1 10.5 1.2 1 21 412 432 412 433 0.93
5 16 0.024 2.4 9.4 0.8 1 23 442 464 442 464 0.95
6 16 0.00014 0.014 16.4 2.2 2 23 472 494 471 494 0.96
7 16 0.00053 0.054 14.6 2.3 2 23 502 523 501 523 0.96
8 16 0.012 1.3 10.3 0.3 2 21 550 569 549 570 0.94
9 16 0.0051 0.52 11.5 4.6 1 23 618 641 618 641 0.98
10 16 0.0057 0.58 11.4 0.4 2 23 679 701 678 701 0.94
11 16 0.00011 0.011 16.8 1.2 2 23 733 755 732 755 0.95
12 16 0.0012 0.12 13.5 0.3 1 23 764 786 764 786 0.95
13 16 0.0015 0.16 13.2 1.5 1 23 792 814 792 814 0.99
14 16 2.8e-07 2.8e-05 24.9 2.1 1 23 820 842 820 842 0.98
15 16 0.00033 0.033 15.3 6.3 1 23 848 870 848 870 0.95
16 16 7.8e-06 0.00079 20.4 0.2 2 23 877 898 876 898 0.97

Sequence Information

Coding Sequence
ATGTCGCTTAAAAGAATTTGCAGAACTTGCGATGTAACAAACTCCGCAGAGATCATTAAACTGAATACATGTCCTAACAAATATGGTGGAAAGATGCTTCTGGATTTGTTAAAAGAAGTAACTAAAATGGAGATAGGATTAGAATACGGAGAAAAGTTACCACAGTTCATTTGTAGCACTTGCGTTCATAAGCTACAAAATGCATATGATTTTGTGATTCAAGCACATgaggcaaacaaacaaatgttggATTTTCTAACAGCCATCAATACAGAATGCCTTCAAGAATTTCCAATGGAATTTAGTACTGAACAATTATTAGAGATAAAGTTAGAAGAAGGCAGCTACGAAGAGTCAATTTCACAAAACACAACTAATTTGAGTGACCAGAGTAAATTAGatgtaaaaagaaatgcatCAGATGCTGAGGGATATGTTAATCAAGTAATAGATCCAttagttataaataaaactataaagaACACTGCAAAACGACCAAAGAAAAGCCTCGGCAATGATACTGTAAGCTCTGaTGAACTTGATGAATTACCATTGCAACAGCGGAGactcaaacaaaagaaaacgaatGTATTAAGAACGAAGAATGATAGGCAATTCCGTAAGACTGAACAATTCATTTGTAATACTtgtaaacaaacatttttaagtaAGGATGACTTAGTTACTCATCTTAAAACGCATGAAGaagaacaaatcaaaataaaagtaacagCTACTCTTCCGGAACCCAATCAAGCCAAAAATGTTGATATCAACCTGTGCAGACCACATGGATGCAAATTAATTCAGTGCATGATTTGTCtaaaaaagtttacaaaaatcTCTGATTTACGGAAACATTTAAATGAGCACCCAGTTATATTTTCGTTTGCAGAACGCTCCAACAAATCATTGCAGGATATAGCCaactgtttttatatttactttaaagATGCAACTGAAGagaatttattaaagaaaatacgTAAAGATTTAAGtgataaaaaatttgataatttttactCAATAACAAATCAATCTGGATATGAATTAAGTTTGTCGAGTTCAGagactgaaagtgaagttgtATCAGAATcggaatcagaatcagaagaGCCCAAATGTAAAGCTTCAAGAAAGAGCTACATCTGTGAATTGtgcaataaaaagtatattcgGAAATATCAACTTTTTGATCACCAGAGGCTTGAACATGAATGGAGTGAAGCAGTTCATGTTTGCAGACGTTGCGATGCAAgatttgtaaataaacaacTATTGGAACATCATTACGAAACACAGTGCAAAAATTCACATAAGCGTTTCATATGTAAGAAGTGCCCTCTTAGATTTCGATGGAAACCCAATTTATTAACACATTACGATAACCATAGAAAGAACAAAGAAACATTACAATGTTCGAAATGCAACCGAACCTACGAtgacaaaaaatcatttactaTACACATGCTTAAAACTCATGCGGACAGTTCTAAAATGCTTTCTTGCCAATGGTGTAGTCGAACATTTTACCGCAGGGATTATATGTTAAAACATCTAAAGCGCCATGGCATTAGAGAAAAAGATCTGCCTCTGGCTGAAATGCTTGTTATGGCAACTTCCAAACCAAATGGTGATAAAATCATCCAATGCAAAATTTGTAATCTACAATTTGAACGGATTTGTGATTTAAAAGAACACATTCTATTGGAGTTGAAATTAAAGTTATCGAAACATCAAAGCTACGAATCATTAACCAATTACACAATTACAAATGAATCTGGTTTTGAATTGCACCTCGATGATTCTGAAACAGATGAAGAAGATTCAGTTGAGAGTAAGCAGATGTCTTACAAATGTGAGATTTGTCAGGTGCAGTGTAAGcgcaaatttgaaatgtttcaACATCAACGATCAATGCACCGGTTTGAACATTTGCCACATTCTTGCGAGAAGTGTATCTTTAAATGTGTATCAAAgaatATACTTGATCATCATCGGAGTATACAATGCTTCAATGAGCAAAAGCAGTTGTCTTGTGAAAAATGTTCATATAAATTCATGTGGCCTGAAAATTTGACGCGGCATATGTTGCTCCAACATCCGGACGAAGTAGATAGCAAAATGTCTTCACAAGAGTCAATCGTAAATAATTCCAAGGAGGTTGTTGGCGAGACAGTTGCGACTGCCCAGTTACAGTGTCCACATTGTGATAAAACATACCAATTTCAAGGACGCCTTAATAATCACATTCGGGATGTACATAAGAGaaaagatattgaaaaaaaatttctttgttctttgtgTGGAATAGAGTTGCAATCAAATGCTTATTTGAATACGCATATGCGAAGACACACTGGAGAGAAACCCTTCAAATGTGATATGTGCGAAATGGCGTTTCCACTGCATTACGAATTGTTACTGCATCGTAGAAAACACACGGGTGAAAAGCCTTATCACTGCACTGTTTGTGGCAAAAATTTTGCCCGATCTGATAAACTCAAGCGGCATATGTTAATACACAGTGATATAAAACCACACAAATGCACAGTATGTGGTAAATGCTATCGACAGTCAAAAGATTTAAAACTGCATTTTCTACAACACACTGGTGAAACATATGTGGAATGTAATATATGTGGTGAGCGGTTCATACAGAATGTCACCTTAGAAAAGCACCGAATGATGCATGGAcacttttga
Protein Sequence
MSLKRICRTCDVTNSAEIIKLNTCPNKYGGKMLLDLLKEVTKMEIGLEYGEKLPQFICSTCVHKLQNAYDFVIQAHEANKQMLDFLTAINTECLQEFPMEFSTEQLLEIKLEEGSYEESISQNTTNLSDQSKLDVKRNASDAEGYVNQVIDPLVINKTIKNTAKRPKKSLGNDTVSSDELDELPLQQRRLKQKKTNVLRTKNDRQFRKTEQFICNTCKQTFLSKDDLVTHLKTHEEEQIKIKVTATLPEPNQAKNVDINLCRPHGCKLIQCMICLKKFTKISDLRKHLNEHPVIFSFAERSNKSLQDIANCFYIYFKDATEENLLKKIRKDLSDKKFDNFYSITNQSGYELSLSSSETESEVVSESESESEEPKCKASRKSYICELCNKKYIRKYQLFDHQRLEHEWSEAVHVCRRCDARFVNKQLLEHHYETQCKNSHKRFICKKCPLRFRWKPNLLTHYDNHRKNKETLQCSKCNRTYDDKKSFTIHMLKTHADSSKMLSCQWCSRTFYRRDYMLKHLKRHGIREKDLPLAEMLVMATSKPNGDKIIQCKICNLQFERICDLKEHILLELKLKLSKHQSYESLTNYTITNESGFELHLDDSETDEEDSVESKQMSYKCEICQVQCKRKFEMFQHQRSMHRFEHLPHSCEKCIFKCVSKNILDHHRSIQCFNEQKQLSCEKCSYKFMWPENLTRHMLLQHPDEVDSKMSSQESIVNNSKEVVGETVATAQLQCPHCDKTYQFQGRLNNHIRDVHKRKDIEKKFLCSLCGIELQSNAYLNTHMRRHTGEKPFKCDMCEMAFPLHYELLLHRRKHTGEKPYHCTVCGKNFARSDKLKRHMLIHSDIKPHKCTVCGKCYRQSKDLKLHFLQHTGETYVECNICGERFIQNVTLEKHRMMHGHF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00061333;
90% Identity
-
80% Identity
-