Amin014562.1
Basic Information
- Insect
- Amiota minor
- Gene Symbol
- -
- Assembly
- GCA_037043295.1
- Location
- JBAMAW010002152.1:494268-497308[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0041 0.41 11.8 0.2 1 23 113 136 113 136 0.98 2 13 0.00024 0.024 15.7 0.1 2 23 141 163 140 163 0.93 3 13 2.6e-05 0.0026 18.7 5.3 2 23 174 196 173 197 0.95 4 13 0.027 2.7 9.2 9.5 2 23 496 517 496 517 0.97 5 13 1.6e-06 0.00016 22.5 2.6 1 23 523 546 523 546 0.94 6 13 4e-05 0.004 18.1 0.4 1 23 551 574 551 574 0.93 7 13 7.6e-06 0.00077 20.4 3.6 1 23 596 618 596 618 0.96 8 13 4.9e-05 0.005 17.8 1.5 1 23 623 645 623 645 0.98 9 13 3.7e-05 0.0038 18.2 1.7 1 23 651 673 651 673 0.95 10 13 5.4e-06 0.00054 20.9 0.6 1 23 679 701 679 701 0.98 11 13 1.4e-06 0.00014 22.8 1.7 3 23 709 729 708 729 0.99 12 13 2.8e-08 2.9e-06 28.1 1.1 1 23 735 757 735 757 0.99 13 13 0.04 4.1 8.7 2.2 1 23 762 785 762 785 0.94
Sequence Information
- Coding Sequence
- ATGGCACAGGCGAGGAAGCTTGACGCAGAGCGGATTTGTCGTGTTTGCCTGCGTGAGCACAGTGAACTGTTTCTCATTTATGATGAGACGCCTGTGGAGCAAGGCATGAACATTGTTCAGATCCTAAATGAATGTACGCGCTATACAGTGGAGCGGTTTGATAAGATGCCGCATCAAATGTGTGCCGGTTGCATTGCTGAGGCGCGTGCCGCTTACCGCTTCAAGCGAACAGCCGATGAGTCCTATAGGACACTAGTTGGTATGTTGGGTCGTATTCCACGCAAGAATAAGGACAATTGTGTCGATAGCGGTACACAGACTGAACAAAGTACTCTGTATCCATGTGAGATGTGCGATGAGAAGCTCTTTAGCATGGGTGAATTGCGCCAGCACCGCAATACTGTGCATCAGTCCGAGTTGAAGTGCAAGGTGTGTGGAAAGGTGTATGAACAATTGCGACTGTTGCAAATGCATTTGGCGCAGGCACATGATGAACATGGATCTGTGAGTGCACACTTGCAATGCAAACAGTGTGAGAGGGTTTTTTCGCGACGCGATCATCTCATGCGGCACAAGCGTAATGTACACCACCAGCAGATACCGGTGCGTTCAAAGCCGGAGCAGCAAAGTAAAGGGAAAGCGGAAAAACCGCCGGATGGACTCTCATCACTATTGGAAGAACCGGAAATGGTGGTAATGACAGATGCCACTGATAAGAGCCTTGATAATTACTGGATGAACAACATGGAATCCGGTGATGCAACGGAATTGGGGGGTGCAGGAGGCGATTACCAAACAAATCCAATATCTAGCGATGACGAGACGAAGCCAGATGACATTGATATCAATCATAAGCTGTGGGTGGCACTGGAACCAGAAGTGAATATGGATTTTTCATCATCACAACTGGATGAAAAAGAGGCAGAGGAGACcagcaaaaagaaattgaaacgAAAAAGATCCGCccgcaaaaacaaaaactatagtCAGGACAACGATAATGATggcgatgataatgatgaaagcACTGACAATAATAACGGCGATGACGATGGTGCATATGATCCGAATAGCGATCGAGATCATTCATCAGATGTGGAGGATGAACTATCCGAAAAAACTACTGACGCAAACACAAAGAATGGCGTGGACATAGAAATAAAGACCGAACCATTGGAATTTCAAAGCATCATAGGTGAAGAAGAAACCATAGATACCCTAAGCAACACTGGAATCTCATTGAAGAGCGAGAAACTGGAAATCGAAGAACAAGTGAACTCATCTGCGGAACAAAGTGATGTAATAGATGTCAACAAATCTAATTCTAATGCAATTGAATTATCAGAAGGGGCTGCAACTAGCGGCAATGAAAGCGGCAAggctaaaacaacaaaaatgagtAAACCCAAAGTAGAGATTGTGCGTGAATATTTGGAGAAAAAACGAACGCCACGTAGACACCGACGCGATGATAATCCCGAGAATCGCTGCGATCTTTGCCAGCGCACATTCTCAAGGCATTGTCATCTACTAAGACACAAACTATCACATCTAGAGCAGAAACCTCATGCTTGTCCACACTGCCCAAAGACATTCGCACGCAGCGACCATCTAAAGGCCCACGTACTGAGCTTGCATGGCACACGTGACTTCAAGTGCACGATTTGTGATTCGGCATTCACTCGTGCCGATGCGCTTGAACGCCATAAGGTTAGCAAACACGATGGTGCCGTTCTAGATGGCAGCAGTAGCTCAGCCGCAGGCAGCTTACTGGAAGCTAAGCTTCATGCCTGTGAATACTGTGAAAAGAAGTTCACCAGCAAAAGTTACTTGCGCAAACACACGCTCATACACACTGATCTGTTGTACGCCTGCAAGAGTTGCGATATGACATTCAAGGATCGCCAACAGTTGCGTGAGCACGAAAAGACACACACAAGTGAACGCAACTTTCTTTGCTGCATTTGTGGCGATAGCTTTGCGCGTAATGATTATCTTCGTGTACATATGCGACGTCATAATGGTGAGAAGCCCTACAAGTGTAAATATTGTGGCAAAGGATTCCCAAGAGCCACCGATGTCAAGGTGCATGAGCGTTATCATACCGGTACTAAACCAAACTTGTGCACGCTCTGCGGCAAAGGTTTCCATCGCGCCTATAATCTGACAATTCACATGCGAACGCATACGGGCGAACGCCCATACAAATGCGATCAGTGCCCCAAGAGCTTTACGCAAAGTAACGATCTGAAGGCACACATACGACGACACACCGGGGAGCGTTACAAGTGCAATGAATGTGATGCTTGCTTCCTGCAACTCTATGCAATGCGTCACCATGCTCTTAGTGTGCATGGCACCCATATTGAATCGAAAACAGGTCGCTTGCAACGAACTGGTCTCTATGATGATCCCTCAACACATCCACAAATAACAACTGTACTGGTTGCACCGCAAAACTATGAGGCCTCAACACATCAAGCACAACCATTACCGCCGCCACCACAACCAGtgcaggcaacaacaacatccgTCGCAGCCACAACGACAACCGCAACTATATTAAACCAACAGCTGCAGcaacagcaccaacaacaacagtcttTGTCATCTCCACAATTACATGGACAGCACTCTCAGGATTCGGGAGAGAGTTATGCATCGTCATCTATTGAGACTGTTGTCGTACAGCCAATGGCTGCTGCTCAACTGGCAGTGCCCGGTCATGAATATTTGGCACCATATTTACATCTTCCCAGTGCAATTGTTCGGAtacaacaatcaatcaatcatcaacGGCCAGTTTCCAATCAGGAGCAGCAACAAACATAA
- Protein Sequence
- MAQARKLDAERICRVCLREHSELFLIYDETPVEQGMNIVQILNECTRYTVERFDKMPHQMCAGCIAEARAAYRFKRTADESYRTLVGMLGRIPRKNKDNCVDSGTQTEQSTLYPCEMCDEKLFSMGELRQHRNTVHQSELKCKVCGKVYEQLRLLQMHLAQAHDEHGSVSAHLQCKQCERVFSRRDHLMRHKRNVHHQQIPVRSKPEQQSKGKAEKPPDGLSSLLEEPEMVVMTDATDKSLDNYWMNNMESGDATELGGAGGDYQTNPISSDDETKPDDIDINHKLWVALEPEVNMDFSSSQLDEKEAEETSKKKLKRKRSARKNKNYSQDNDNDGDDNDESTDNNNGDDDGAYDPNSDRDHSSDVEDELSEKTTDANTKNGVDIEIKTEPLEFQSIIGEEETIDTLSNTGISLKSEKLEIEEQVNSSAEQSDVIDVNKSNSNAIELSEGAATSGNESGKAKTTKMSKPKVEIVREYLEKKRTPRRHRRDDNPENRCDLCQRTFSRHCHLLRHKLSHLEQKPHACPHCPKTFARSDHLKAHVLSLHGTRDFKCTICDSAFTRADALERHKVSKHDGAVLDGSSSSAAGSLLEAKLHACEYCEKKFTSKSYLRKHTLIHTDLLYACKSCDMTFKDRQQLREHEKTHTSERNFLCCICGDSFARNDYLRVHMRRHNGEKPYKCKYCGKGFPRATDVKVHERYHTGTKPNLCTLCGKGFHRAYNLTIHMRTHTGERPYKCDQCPKSFTQSNDLKAHIRRHTGERYKCNECDACFLQLYAMRHHALSVHGTHIESKTGRLQRTGLYDDPSTHPQITTVLVAPQNYEASTHQAQPLPPPPQPVQATTTSVAATTTTATILNQQLQQQHQQQQSLSSPQLHGQHSQDSGESYASSSIETVVVQPMAAAQLAVPGHEYLAPYLHLPSAIVRIQQSINHQRPVSNQEQQQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00061321;
- 90% Identity
- -
- 80% Identity
- -