Amin009851.1
Basic Information
- Insect
- Amiota minor
- Gene Symbol
- bab1
- Assembly
- GCA_037043295.1
- Location
- JBAMAW010001304.1:243510-244777[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.6e-16 1.6e-12 47.6 0.0 5 43 1 40 1 42 0.95 2 2 3.3 9.2e+03 -2.9 3.1 4 24 140 163 137 165 0.70
Sequence Information
- Coding Sequence
- ATGGCTGAAGCAATTTTTAGTGTATTAAAAGAGGGGCTCTCACTGTCACAAGCGGCACGCAAATATGATATACCCTATCCGACTTTTGTACTCTACGCTAATCGCGTCCATAATATGCTTGGCCCTTCAATTGATGGAGGTCCGGACTTACGTCCCAAGGGTCGAGGGAGACCACAACGTATACTCTTAGGCATTTGGCCAGATGAGCATATCAAAGGCGTTATCAAGACGGTAGTCTTTCGTGATTCGAAGGACCTGAAGGATGAAAGCCTAGCGCACATAGCACCCTATGGTAGACATTCGCCTGTATTTCCCTTCCAGGATATGCCCATGAATTATCCCGGTGGCCCAGTTAATCCTGGTGGACCGTGTCCGAATGGTATGCCTACACCCACCGGAGATCAAATGTCGCAGGAAGCAACTGCTGCCGCTGTAGCTGCCGTCGCACATAATATACgccaacaaatgcaaatggcTGCCGCCGCACAACAACATCAGGATGGACCACCTGGGCTCTTCAACTTACCACCTCATCTACAACCACCACATTCAGGTGGACCTGGTGGCATTCCGCTTCCAAAAGCTAGCATTTCACCAGCTCTTAGCAGTGGTTCGAATCCTGGAGGAGGTGGAGGAGGCCTGGGTCTTATGCCACGCCATGCTCCATCACCTTGTGGTCCAGGAGTGTCTGGCGGTGGTAGCGGCGTCGGTGGAGTCATACCAGGTCTTCCACCTAACATGCCGCCCAGCATGGCTGTCGCTTTGGGTCGTTGTGATCCAGCTGCTTTACtgaatcaacaacagcaacaactacaattgCAGCAGTTGCACCTGCAGCAACAGCACGCActgcatcagcagcaacaaaaatctGGTTTCGGTGTAAGTTCCATGCCACATCCGTCGTCCTcagccgcagcagcagcagcaagtaCGAGTTCATTAGCCGCTggtcatcagcatcagcatcatcaacatcacctCCAACATCATCtccatcagcagcagcagcagcagcagcagcaacagcaacaacagcagcagcagcaacaccaacaagcCCAGCAGCTACTTCATCCACATCATATCCCTCCCCACCCCCTTCAtcctcaacaacaacaccagtCTTCTCTGTCATCTGCACCAACATCATCTTCCGTCGACAAATCAAAAGAGCTTTCTACTCCGGAGCGAAGACATAGCCAATGA
- Protein Sequence
- MAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDSKDLKDESLAHIAPYGRHSPVFPFQDMPMNYPGGPVNPGGPCPNGMPTPTGDQMSQEATAAAVAAVAHNIRQQMQMAAAAQQHQDGPPGLFNLPPHLQPPHSGGPGGIPLPKASISPALSSGSNPGGGGGGLGLMPRHAPSPCGPGVSGGGSGVGGVIPGLPPNMPPSMAVALGRCDPAALLNQQQQQLQLQQLHLQQQHALHQQQQKSGFGVSSMPHPSSSAAAAAASTSSLAAGHQHQHHQHHLQHHLHQQQQQQQQQQQQQQQQQHQQAQQLLHPHHIPPHPLHPQQQHQSSLSSAPTSSSVDKSKELSTPERRHSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -