Amin018950.1
Basic Information
- Insect
- Amiota minor
- Gene Symbol
- -
- Assembly
- GCA_037043295.1
- Location
- JBAMAW010002170.1:1262639-1264250[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.3 3.8e+03 -1.7 0.0 3 20 116 133 116 134 0.85 2 4 1.5e-13 4.3e-10 39.8 0.0 3 43 307 347 306 349 0.90 3 4 0.023 65 4.0 0.0 27 37 378 388 375 392 0.90 4 4 3.1e-19 8.7e-16 58.0 0.0 3 41 416 454 414 456 0.93
Sequence Information
- Coding Sequence
- ATGGGCCACACAGACACCCTTTTGGACATAAATCGCTCCTTACGCGATGAAGCAGAAACTTGCGAAGTGACTCTAGTTGCCAGAGGTGGTTCTACAGTTCGCGCTCATCGTTTTGCTCTGTGCACTTGCAGCGAATTACTCCGAGATGCTCTCAAGGATGTGCCCAATGACACGGAGTGTACAATTATACTGCCTGATATTAACAGTTCACTCTTGGAGAGTATGCTTTCGTTTATTTATATGGTTGCCCACGTACCAATGGGTGCTGCAACCAATATTCCCATAAAGACCATAAGTGGCCTACAAATTACACAGGAAGAATTTGTTGAAGATGTCGAAGGTGTCGAGAAAATTGTTGagGCAAACAACGCCGTCACTGAGCAGCAGATGACCACCACTAGAGGCTTAGAGTATATTGATGTCTACAGTGAACAGGCGAAAATCTCTTATTCCATTGAACACATGGCAGGAAGCGGTGGCGGTGGTGAATTCATACTGACAGAAAATGCAAACACTTATACCATAACAACACCGAGTCAAGAAGCCGCtgataaattaaatgcaacaGTCAGCGTGGTGGATAGCAATGATTTAGTGGAAGATGAAACCGAAGTtgttgatgaagaagaagttgatgatgatccAAACATAATCGAAGAGGAGTACAATAGTAATGCAGACCCTCTTTTGGAAATGACCGGAACAGATGTTGAATTAAATGACCCCGTTGAGATGAACCAAGGACAAATCGATTCTTCTACCGAAGCTGATGTACAAATGCTGGAAGCAGCAAGGGCTTCTATTAAATTGCGTACAATAAAAGCGAAACGCCAAATTGCTGGACATAAACTAGCAATGGATCAAGGTGGCAATGCCACAAAATTATCTAAATCTAAAGCAAAGAATCCAATAGAAATGGACAACCTCGAGTTGGCTGCCCACGCTGTTCTTAATGAGGGACTAAGCTTACAGAAAGCTGCCGATAAGTTTGATTTGTCCAAGACAGTCCTCTGGCGACGCATGCATAAGGATCCAACCTATCAAAAGGTCGGTCGTGTGAAACCAGAACTCTCGCTGGCATTTGAACGGTTTAAAACTGGTGATTCACTTAAGAATATTAGTAAAGATCTTGAAATACCAATGTCAACATTACATCGTCATAAGGTAAGGCTTTCGGATCAGGGTCTTCTGCCGGATTTTGTAACATGTCGTCGTCGCGACGCAACCCCTAAAGATGAGCTTCAGGAAAAACTTGCCAAGGCTGTGCATGCGTGTGTCCATGAGGGCATGTCACAGAATCATGCAGCCAATATTTACGAGATACCAAAAAGTACACTTTGGCGTCATCTTAAACGACGTGTCGCAGAGGCTGAACGAGCCCTTGATTCAGAGAATATCAAGGAAGAGGAAGTTGTATTAccttaa
- Protein Sequence
- MGHTDTLLDINRSLRDEAETCEVTLVARGGSTVRAHRFALCTCSELLRDALKDVPNDTECTIILPDINSSLLESMLSFIYMVAHVPMGAATNIPIKTISGLQITQEEFVEDVEGVEKIVEANNAVTEQQMTTTRGLEYIDVYSEQAKISYSIEHMAGSGGGGEFILTENANTYTITTPSQEAADKLNATVSVVDSNDLVEDETEVVDEEEVDDDPNIIEEEYNSNADPLLEMTGTDVELNDPVEMNQGQIDSSTEADVQMLEAARASIKLRTIKAKRQIAGHKLAMDQGGNATKLSKSKAKNPIEMDNLELAAHAVLNEGLSLQKAADKFDLSKTVLWRRMHKDPTYQKVGRVKPELSLAFERFKTGDSLKNISKDLEIPMSTLHRHKVRLSDQGLLPDFVTCRRRDATPKDELQEKLAKAVHACVHEGMSQNHAANIYEIPKSTLWRHLKRRVAEAERALDSENIKEEEVVLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00062943;
- 90% Identity
- iTF_00062943;
- 80% Identity
- iTF_00062943;